Detailed information NTG0441536

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CA267_RS04045
• Genome accession: NZ_CP052766
• Coordinates: 868327..869256 (+)
• Length: 309 a.a.
• NCBI ID: WP_075608676.1
• Uniprot ID: -
• Organism: Alteromonas pelagimontana strain 5.12
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 863327..874256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA267_RS04020 (CA267_004025)	ampD	864127..864702 (-)	576	WP_075608681.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
CA267_RS04025 (CA267_004030)	-	864854..865357 (+)	504	WP_075608680.1	TIGR02281 family clan AA aspartic protease	-
CA267_RS04030 (CA267_004035)	nadC	865379..866239 (+)	861	WP_075608679.1	carboxylating nicotinate-nucleotide diphosphorylase	-
CA267_RS04035 (CA267_004040)	-	866490..866924 (+)	435	WP_075608678.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
CA267_RS04040 (CA267_004045)	pilC	867025..868236 (+)	1212	WP_075608677.1	type II secretion system F family protein	Machinery gene
CA267_RS04045 (CA267_004050)	pilD	868327..869256 (+)	930	WP_075608676.1	A24 family peptidase	Machinery gene
CA267_RS04050 (CA267_004055)	coaE	869256..869891 (+)	636	WP_075608675.1	dephospho-CoA kinase	-
CA267_RS04055 (CA267_004060)	zapD	870369..871121 (+)	753	WP_075608674.1	cell division protein ZapD	-
CA267_RS04060 (CA267_004065)	yacG	871200..871430 (+)	231	WP_075608673.1	DNA gyrase inhibitor YacG	-
CA267_RS04065 (CA267_004070)	-	871544..872410 (+)	867	WP_075608672.1	aspartoacylase	-
CA267_RS04070 (CA267_004075)	mutT	872589..872993 (-)	405	WP_075608671.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 309 a.a.
• Molecular weight: 34115.11 Da
• Isoelectric Point: 7.7224

>NTDB_id=441536 CA267_RS04045 WP_075608676.1 868327..869256(+) (pilD) [Alteromonas pelagimontana strain 5.12]
METFFQLSSHSPLFFLGTVFIVSLMVGSFLNVVIYRLPIMMEKSWQREYNAYFQPRNSEPGNHNARDFAVPAADSSNTDT
AAFNLVKPDSTCPHCGHKIRPWENIPLLSYLFLRGKCANCGTGISLRYPLVELFTGLVCTFTAWHFGPSSQALWAVLFVY
ILVALLFIDLDKMLLPDQLTLPLLWLGLLLSTQHVFVGPVDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAAL
GAFTGWQGLPVIILLSSFVGAIAGLAIMLVQQKGRSLAIPFGPYLAVAGFLTLLYKHDIIAAYLNWAFG

Nucleotide

• Length: 930 bp

>NTDB_id=441536 CA267_RS04045 WP_075608676.1 868327..869256(+) (pilD) [Alteromonas pelagimontana strain 5.12]
ATGGAAACATTCTTCCAACTTAGTTCACACAGCCCCCTGTTTTTCCTCGGGACCGTATTCATTGTTAGTTTGATGGTAGG
CAGCTTTTTAAATGTCGTGATATATCGGCTGCCTATTATGATGGAGAAAAGCTGGCAACGAGAATACAACGCATATTTTC
AACCGAGAAATTCCGAGCCAGGCAATCATAATGCCCGTGACTTTGCGGTTCCAGCGGCAGATTCGTCTAATACCGATACC
GCTGCGTTTAACCTGGTCAAGCCAGACAGCACCTGCCCCCACTGTGGACACAAAATTCGGCCGTGGGAAAATATTCCCCT
GCTAAGTTACCTGTTTTTGCGCGGCAAGTGCGCAAACTGCGGCACCGGCATTTCCTTACGTTATCCGCTGGTCGAGCTAT
TTACCGGGCTAGTATGTACCTTTACCGCCTGGCATTTCGGCCCCTCAAGCCAGGCGCTGTGGGCTGTACTTTTTGTTTAT
ATTCTAGTGGCTTTGCTGTTTATCGACTTAGATAAAATGCTGTTACCTGACCAGCTCACGCTACCATTGCTGTGGCTGGG
GTTATTACTTTCTACTCAACACGTATTTGTTGGGCCGGTGGATGCAATTATTGGTGCAGCGGCGGGCTATCTGAGTTTAT
GGTCGGTGTACTGGCTGTTTAAATTGGCAACCGGTAAGGAAGGCATGGGTTACGGCGATTTTAAGCTGCTCGCCGCCCTT
GGCGCATTTACCGGCTGGCAGGGTTTACCGGTAATTATTCTGTTGTCTTCATTTGTCGGTGCCATCGCTGGACTTGCGAT
CATGCTAGTGCAGCAAAAAGGGCGTTCGTTAGCGATACCCTTTGGCCCTTATCTGGCCGTTGCCGGTTTCCTTACTTTAC
TTTATAAACACGATATCATTGCGGCATATTTAAACTGGGCGTTTGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-146)

• Type IV leader peptidase family (Peptidase_A24) (157-265)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	51.447	100	0.518
pilD	Vibrio cholerae strain A1552	52.901	94.822	0.502
pilD	Neisseria gonorrhoeae MS11	45.183	97.411	0.44
pilD	Acinetobacter nosocomialis M2	46.503	92.557	0.43
pilD	Acinetobacter baumannii D1279779	46.154	92.557	0.427