Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | HH212_RS03365 | Genome accession | NZ_CP051685 |
| Coordinates | 791504..792739 (+) | Length | 411 a.a. |
| NCBI ID | WP_169434089.1 | Uniprot ID | A0A7Z2VU70 |
| Organism | Massilia forsythiae strain GN2-R2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 786504..797739
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HH212_RS03350 (HH212_03350) | - | 787806..789047 (+) | 1242 | WP_169434086.1 | hypothetical protein | - |
| HH212_RS03355 (HH212_03355) | - | 789059..789466 (+) | 408 | WP_169434087.1 | hypothetical protein | - |
| HH212_RS03360 (HH212_03360) | pilB | 789766..791493 (+) | 1728 | WP_169434088.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HH212_RS03365 (HH212_03365) | pilC | 791504..792739 (+) | 1236 | WP_169434089.1 | type II secretion system F family protein | Machinery gene |
| HH212_RS03370 (HH212_03370) | - | 792795..793175 (-) | 381 | WP_169434090.1 | translational machinery protein | - |
| HH212_RS03375 (HH212_03375) | - | 793322..794008 (-) | 687 | WP_169434091.1 | dihydrofolate reductase family protein | - |
| HH212_RS03380 (HH212_03380) | - | 794151..794417 (-) | 267 | WP_169434092.1 | PAAR domain-containing protein | - |
| HH212_RS03385 (HH212_03385) | - | 794443..796278 (-) | 1836 | WP_169434093.1 | DUF2875 family protein | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 44802.93 Da Isoelectric Point: 10.0207
>NTDB_id=440450 HH212_RS03365 WP_169434089.1 791504..792739(+) (pilC) [Massilia forsythiae strain GN2-R2]
MATTSAQLRAGGAQVKEHVFAWEGRDKTGKIVRGEMRAGGETIVNVTLRRQGIMVTKVKKKAYRSGKKIVDKDLTLFTRQ
LATMMKAGVPLLQSFDIVGKGHANPSMSKLILDLRGDIETGTSLNNAFRKYPLYFDPLFCNLVGAGEQAGILEDLLTRLA
IYKEKTLALKAKIKSALMYPISILAIAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLIVMGISDFVVKWWYLIFGSLFG
SLYFFFQAWRRSPNMQAAMDRLLLRLPVFGGVIRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNAVYVDATRRIQT
EVSTGTSLTVAMQNANVFPNMVTQMVSIGEESGALDGMLGKVADFYEEEVDEAVAALSSLMEPMIMVILGVLIGGLVIAM
YLPIFKLGSVV
MATTSAQLRAGGAQVKEHVFAWEGRDKTGKIVRGEMRAGGETIVNVTLRRQGIMVTKVKKKAYRSGKKIVDKDLTLFTRQ
LATMMKAGVPLLQSFDIVGKGHANPSMSKLILDLRGDIETGTSLNNAFRKYPLYFDPLFCNLVGAGEQAGILEDLLTRLA
IYKEKTLALKAKIKSALMYPISILAIAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLIVMGISDFVVKWWYLIFGSLFG
SLYFFFQAWRRSPNMQAAMDRLLLRLPVFGGVIRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNAVYVDATRRIQT
EVSTGTSLTVAMQNANVFPNMVTQMVSIGEESGALDGMLGKVADFYEEEVDEAVAALSSLMEPMIMVILGVLIGGLVIAM
YLPIFKLGSVV
Nucleotide
Download Length: 1236 bp
>NTDB_id=440450 HH212_RS03365 WP_169434089.1 791504..792739(+) (pilC) [Massilia forsythiae strain GN2-R2]
ATGGCAACCACTTCAGCGCAACTGCGCGCCGGCGGCGCCCAGGTCAAGGAACACGTGTTCGCCTGGGAAGGCCGCGACAA
GACCGGCAAGATCGTGCGCGGCGAAATGCGCGCCGGCGGCGAAACCATCGTCAACGTGACTCTGCGCCGCCAGGGCATCA
TGGTGACCAAGGTCAAAAAGAAGGCGTATCGCAGCGGCAAGAAGATCGTCGACAAGGACTTGACGCTGTTCACGCGCCAG
CTGGCCACCATGATGAAGGCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGCCATGCGAACCCGTCCAT
GTCGAAGCTGATCCTGGACCTGCGCGGCGACATCGAGACCGGCACCAGCCTGAACAACGCCTTCCGCAAGTACCCGCTGT
ACTTCGACCCGCTGTTCTGCAACCTGGTGGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTCACGCGCCTGGCG
ATCTACAAGGAAAAGACGCTGGCGCTGAAGGCCAAGATCAAGTCGGCGCTGATGTACCCGATCTCGATCCTGGCGATCGC
CTTCATCGTCACCGCCGTGATCATGATCTGGGTGGTGCCGGCCTTCAAGGAAGTGTTCACCAGCTTCGGCGCCGACCTGC
CCGCCCCGACCCTGATCGTGATGGGCATCTCCGACTTCGTCGTCAAGTGGTGGTACCTGATCTTCGGCTCGCTGTTCGGC
AGCCTGTACTTCTTCTTCCAGGCCTGGCGCCGCTCGCCCAACATGCAGGCCGCGATGGACCGCCTGCTGCTGCGCCTGCC
GGTGTTCGGCGGCGTGATCCGCAAGGCCACCATCGCCCGCTGGACCCGTACCCTGGCCACCATGTTCGCCGCCGGCGTGC
CGCTGGTCGAAGCGCTGGATTCGGTCGGCGGCGCCTCCGGCAACGCGGTCTACGTCGACGCCACCAGGCGCATCCAGACC
GAAGTGAGCACCGGCACCAGCCTGACCGTGGCGATGCAGAATGCCAATGTATTTCCGAACATGGTGACGCAGATGGTGTC
GATCGGCGAGGAATCGGGCGCGCTGGACGGGATGCTGGGCAAGGTGGCCGATTTTTATGAAGAGGAAGTCGACGAGGCGG
TGGCGGCCTTGTCGTCGCTGATGGAGCCGATGATCATGGTGATCCTCGGGGTGCTGATCGGCGGGCTGGTGATTGCGATG
TATTTGCCGATCTTTAAATTGGGATCGGTGGTGTGA
ATGGCAACCACTTCAGCGCAACTGCGCGCCGGCGGCGCCCAGGTCAAGGAACACGTGTTCGCCTGGGAAGGCCGCGACAA
GACCGGCAAGATCGTGCGCGGCGAAATGCGCGCCGGCGGCGAAACCATCGTCAACGTGACTCTGCGCCGCCAGGGCATCA
TGGTGACCAAGGTCAAAAAGAAGGCGTATCGCAGCGGCAAGAAGATCGTCGACAAGGACTTGACGCTGTTCACGCGCCAG
CTGGCCACCATGATGAAGGCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGCCATGCGAACCCGTCCAT
GTCGAAGCTGATCCTGGACCTGCGCGGCGACATCGAGACCGGCACCAGCCTGAACAACGCCTTCCGCAAGTACCCGCTGT
ACTTCGACCCGCTGTTCTGCAACCTGGTGGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTCACGCGCCTGGCG
ATCTACAAGGAAAAGACGCTGGCGCTGAAGGCCAAGATCAAGTCGGCGCTGATGTACCCGATCTCGATCCTGGCGATCGC
CTTCATCGTCACCGCCGTGATCATGATCTGGGTGGTGCCGGCCTTCAAGGAAGTGTTCACCAGCTTCGGCGCCGACCTGC
CCGCCCCGACCCTGATCGTGATGGGCATCTCCGACTTCGTCGTCAAGTGGTGGTACCTGATCTTCGGCTCGCTGTTCGGC
AGCCTGTACTTCTTCTTCCAGGCCTGGCGCCGCTCGCCCAACATGCAGGCCGCGATGGACCGCCTGCTGCTGCGCCTGCC
GGTGTTCGGCGGCGTGATCCGCAAGGCCACCATCGCCCGCTGGACCCGTACCCTGGCCACCATGTTCGCCGCCGGCGTGC
CGCTGGTCGAAGCGCTGGATTCGGTCGGCGGCGCCTCCGGCAACGCGGTCTACGTCGACGCCACCAGGCGCATCCAGACC
GAAGTGAGCACCGGCACCAGCCTGACCGTGGCGATGCAGAATGCCAATGTATTTCCGAACATGGTGACGCAGATGGTGTC
GATCGGCGAGGAATCGGGCGCGCTGGACGGGATGCTGGGCAAGGTGGCCGATTTTTATGAAGAGGAAGTCGACGAGGCGG
TGGCGGCCTTGTCGTCGCTGATGGAGCCGATGATCATGGTGATCCTCGGGGTGCTGATCGGCGGGCTGGTGATTGCGATG
TATTTGCCGATCTTTAAATTGGGATCGGTGGTGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
55 |
97.324 |
0.535 |
| pilC | Legionella pneumophila strain ERS1305867 |
53.788 |
96.35 |
0.518 |
| pilC | Acinetobacter baylyi ADP1 |
52.01 |
96.837 |
0.504 |
| pilG | Neisseria gonorrhoeae MS11 |
51.889 |
96.594 |
0.501 |
| pilG | Neisseria meningitidis 44/76-A |
51.637 |
96.594 |
0.499 |
| pilC | Acinetobacter baumannii D1279779 |
51.385 |
96.594 |
0.496 |
| pilC | Vibrio campbellii strain DS40M4 |
40.602 |
97.08 |
0.394 |
| pilC | Vibrio cholerae strain A1552 |
39.798 |
96.594 |
0.384 |
| pilC | Thermus thermophilus HB27 |
37.845 |
97.08 |
0.367 |