Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HH213_RS16500 Genome accession   NZ_CP051684
Coordinates   3611958..3613181 (-) Length   407 a.a.
NCBI ID   WP_169112924.1    Uniprot ID   -
Organism   Duganella dendranthematis strain AF9R3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3606958..3618181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH213_RS16465 (HH213_16465) - 3607195..3608064 (+) 870 WP_169112919.1 ATP-binding protein -
  HH213_RS16470 (HH213_16470) - 3608061..3608453 (+) 393 WP_169112920.1 NUDIX domain-containing protein -
  HH213_RS16475 (HH213_16475) - 3608521..3608694 (-) 174 WP_110847246.1 DNA gyrase inhibitor YacG -
  HH213_RS16480 (HH213_16480) zapD 3608706..3609461 (-) 756 WP_161056074.1 cell division protein ZapD -
  HH213_RS16485 (HH213_16485) coaE 3609563..3610171 (-) 609 WP_169112921.1 dephospho-CoA kinase -
  HH213_RS16490 (HH213_16490) pilD 3610168..3611040 (-) 873 WP_169112922.1 A24 family peptidase Machinery gene
  HH213_RS16495 (HH213_16495) - 3611196..3611975 (+) 780 WP_169112923.1 sensor histidine kinase -
  HH213_RS16500 (HH213_16500) pilC 3611958..3613181 (-) 1224 WP_169112924.1 type II secretion system F family protein Machinery gene
  HH213_RS16505 (HH213_16505) pilF 3613194..3614924 (-) 1731 WP_169112925.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HH213_RS16510 (HH213_16510) - 3615056..3616336 (-) 1281 WP_110847239.1 HlyC/CorC family transporter -
  HH213_RS16515 (HH213_16515) - 3616466..3616708 (-) 243 WP_229263029.1 FlxA-like family protein -
  HH213_RS16520 (HH213_16520) - 3616831..3617061 (-) 231 WP_169112927.1 pentapeptide MXKDX repeat protein -
  HH213_RS16525 (HH213_16525) - 3617116..3617847 (-) 732 WP_371875715.1 molybdopterin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44493.46 Da        Isoelectric Point: 10.0233

>NTDB_id=440443 HH213_RS16500 WP_169112924.1 3611958..3613181(-) (pilC) [Duganella dendranthematis strain AF9R3]
MALSRSAGNQVKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKVTDKDITLFTRQLATM
MKAGVPLLQSFDIVGKGHGNPSVSKLVMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKE
KTIAIKSKIKSALTYPVSILAVAFLVTAVIMIWVVPAFKEVFTSFGANLPAPTLFVMALSEFFVKWWYVIFGGLFAAIYF
FFRAWQRSLQMQRFMDKLLLRLPVFGEVIRKATIARWTRTLSTMFAAGVPLVESLDSVGGAAGNAVYLDATRKIQTEVST
GTSLTVAMQNADVFPNMVTQMVSIGEESGSLDAMLGKVADFYEDEVDEAVASLSALMEPAIMVILGVLIGGLVVAMYLPI
FKLGAVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=440443 HH213_RS16500 WP_169112924.1 3611958..3613181(-) (pilC) [Duganella dendranthematis strain AF9R3]
ATGGCACTATCGCGCAGCGCGGGCAATCAGGTCAAGGAATCGGTCTTCGCCTGGGAAGGCAAGGACAAAACCGGCAAGAC
CGTGCGCGGCGAACTGCGCGCCGGCGGCGAGGCGGTGGTCAACGTCACGCTGCGCCGCCAGGGCATCATGGTCACCAAGG
TCAAGAAGAAGGTGTACCGCTCCGGCAAGAAAGTCACCGACAAGGACATCACGCTGTTCACGCGCCAGCTGGCGACGATG
ATGAAAGCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGCCACGGCAATCCGTCGGTGTCCAAGCTGGT
GATGGACTTGCGCGCCGATATCGAAACCGGCACCAGCCTCAACCAGGCATTCCGCAAGTTTCCGCTGTATTTCGATCCGC
TGTTCTGCAACCTGGTAGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGGCTGGCGATCTACAAGGAA
AAGACGATCGCCATCAAGAGCAAGATCAAGTCGGCGCTGACCTATCCGGTGTCGATCCTGGCGGTGGCCTTCCTGGTCAC
GGCGGTGATCATGATCTGGGTGGTGCCGGCCTTCAAGGAAGTGTTCACCAGTTTCGGCGCCAACCTGCCGGCGCCGACGC
TGTTCGTGATGGCGCTGTCGGAATTCTTCGTCAAATGGTGGTACGTCATCTTCGGCGGCCTGTTCGCCGCCATTTATTTC
TTCTTCCGCGCCTGGCAGCGCTCGCTGCAAATGCAGCGCTTCATGGACAAGCTGCTGCTGCGCCTGCCGGTGTTTGGCGA
AGTGATCCGCAAAGCCACCATCGCCCGCTGGACCCGTACGCTGTCGACCATGTTTGCGGCCGGCGTACCGCTGGTGGAAT
CGCTCGACTCGGTCGGCGGCGCGGCCGGCAACGCCGTCTACCTGGACGCCACGCGCAAGATCCAGACCGAAGTGAGCACC
GGCACCAGCCTGACGGTAGCGATGCAGAACGCCGACGTGTTCCCCAACATGGTCACGCAGATGGTCTCCATCGGCGAAGA
ATCCGGCTCGCTGGACGCCATGCTGGGCAAAGTGGCGGACTTCTACGAAGACGAAGTGGACGAGGCCGTGGCCTCGCTGT
CGGCGCTGATGGAGCCGGCCATCATGGTTATCCTGGGCGTGCTGATCGGCGGCCTGGTGGTGGCCATGTACCTGCCGATC
TTCAAGCTAGGCGCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.703

99.263

0.543
  pilG Neisseria gonorrhoeae MS11

54.66

97.543

0.533
  pilG Neisseria meningitidis 44/76-A

54.408

97.543

0.531
  pilC Legionella pneumophila strain ERS1305867

53.535

97.297

0.521
  pilC Acinetobacter baumannii D1279779

50.882

97.543

0.496
  pilC Acinetobacter baylyi ADP1

50.754

97.789

0.496
  pilC Vibrio cholerae strain A1552

39.798

97.543

0.388
  pilC Vibrio campbellii strain DS40M4

39.295

97.543

0.383
  pilC Thermus thermophilus HB27

37.845

98.034

0.371