Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | HG264_RS03860 | Genome accession | NZ_CP051625 |
| Coordinates | 809748..810038 (+) | Length | 96 a.a. |
| NCBI ID | WP_169406420.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. gcc21 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 804748..815038
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG264_RS03840 (HG264_03840) | - | 805609..806241 (+) | 633 | WP_169406416.1 | SPOR domain-containing protein | - |
| HG264_RS03845 (HG264_03845) | - | 806304..806786 (+) | 483 | WP_169406417.1 | CvpA family protein | - |
| HG264_RS03850 (HG264_03850) | purF | 806838..808349 (+) | 1512 | WP_169406418.1 | amidophosphoribosyltransferase | - |
| HG264_RS03855 (HG264_03855) | - | 808367..809578 (+) | 1212 | WP_169406419.1 | O-succinylhomoserine sulfhydrylase | - |
| HG264_RS03860 (HG264_03860) | comE1/comEA | 809748..810038 (+) | 291 | WP_169406420.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| HG264_RS18780 | - | 810107..810652 (-) | 546 | WP_372240220.1 | methyl-accepting chemotaxis protein | - |
| HG264_RS18785 | - | 810971..811552 (-) | 582 | Protein_769 | methyl-accepting chemotaxis protein | - |
| HG264_RS03870 (HG264_03870) | rnd | 811732..812868 (+) | 1137 | WP_169406422.1 | ribonuclease D | - |
| HG264_RS03875 (HG264_03875) | - | 812871..813164 (+) | 294 | WP_169406423.1 | YcgL domain-containing protein | - |
| HG264_RS03880 (HG264_03880) | - | 813196..814419 (-) | 1224 | WP_169406424.1 | pyridoxal-dependent decarboxylase, exosortase A system-associated | - |
| HG264_RS03885 (HG264_03885) | - | 814439..814669 (-) | 231 | WP_169406425.1 | DUF3820 family protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 9839.19 Da Isoelectric Point: 4.3901
>NTDB_id=439927 HG264_RS03860 WP_169406420.1 809748..810038(+) (comE1/comEA) [Pseudomonas sp. gcc21]
MKALYLAVLFVLSSWFALPVVAETTAAPSSVISVNINNASAAEIAETLQGVGAAKADAIVAYREANGDFASVESLSEVSG
IGAATVEKNRARIALQ
MKALYLAVLFVLSSWFALPVVAETTAAPSSVISVNINNASAAEIAETLQGVGAAKADAIVAYREANGDFASVESLSEVSG
IGAATVEKNRARIALQ
Nucleotide
Download Length: 291 bp
>NTDB_id=439927 HG264_RS03860 WP_169406420.1 809748..810038(+) (comE1/comEA) [Pseudomonas sp. gcc21]
ATGAAAGCTTTATATCTTGCTGTTCTGTTTGTCCTGTCGTCCTGGTTCGCGCTCCCGGTTGTCGCAGAAACAACCGCGGC
CCCGTCATCGGTCATTTCGGTCAACATCAACAACGCCAGTGCTGCGGAAATCGCCGAAACTCTGCAGGGCGTCGGCGCAG
CCAAAGCGGACGCCATTGTTGCTTACCGTGAGGCTAATGGCGATTTTGCCTCCGTCGAATCTCTGTCTGAAGTCTCGGGT
ATTGGCGCGGCCACTGTCGAAAAGAATCGTGCCCGCATCGCTCTGCAGTAA
ATGAAAGCTTTATATCTTGCTGTTCTGTTTGTCCTGTCGTCCTGGTTCGCGCTCCCGGTTGTCGCAGAAACAACCGCGGC
CCCGTCATCGGTCATTTCGGTCAACATCAACAACGCCAGTGCTGCGGAAATCGCCGAAACTCTGCAGGGCGTCGGCGCAG
CCAAAGCGGACGCCATTGTTGCTTACCGTGAGGCTAATGGCGATTTTGCCTCCGTCGAATCTCTGTCTGAAGTCTCGGGT
ATTGGCGCGGCCACTGTCGAAAAGAATCGTGCCCGCATCGCTCTGCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
45.455 |
100 |
0.521 |
| comEA | Vibrio cholerae C6706 |
48.454 |
100 |
0.49 |
| comEA | Vibrio cholerae strain A1552 |
48.454 |
100 |
0.49 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.409 |
91.667 |
0.49 |
| comEA | Vibrio campbellii strain DS40M4 |
41.584 |
100 |
0.437 |
| comEA/celA/cilE | Streptococcus mitis SK321 |
39.175 |
100 |
0.396 |
| comEA | Acinetobacter baylyi ADP1 |
46.667 |
78.125 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
39.773 |
91.667 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
39.773 |
91.667 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
39.773 |
91.667 |
0.365 |
| comE | Neisseria gonorrhoeae MS11 |
39.773 |
91.667 |
0.365 |