Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HHE93_RS02070 Genome accession   NZ_CP051529
Coordinates   457824..459095 (-) Length   423 a.a.
NCBI ID   WP_259214673.1    Uniprot ID   -
Organism   Shewanella baltica strain 11FHM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 452824..464095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHE93_RS02040 (HHE93_02060) - 453641..454177 (-) 537 WP_006084374.1 thioredoxin family protein -
  HHE93_RS02045 (HHE93_02070) mutT 454734..455126 (-) 393 WP_259214668.1 8-oxo-dGTP diphosphatase MutT -
  HHE93_RS02050 (HHE93_02075) yacG 455203..455412 (-) 210 WP_006083355.1 DNA gyrase inhibitor YacG -
  HHE93_RS02055 (HHE93_02080) zapD 455486..456220 (-) 735 WP_259214670.1 cell division protein ZapD -
  HHE93_RS02060 (HHE93_02085) coaE 456213..456830 (-) 618 WP_259214671.1 dephospho-CoA kinase -
  HHE93_RS02065 (HHE93_02090) pilD 456870..457784 (-) 915 WP_259214672.1 A24 family peptidase Machinery gene
  HHE93_RS02070 (HHE93_02095) pilC 457824..459095 (-) 1272 WP_259214673.1 type II secretion system F family protein Machinery gene
  HHE93_RS02075 (HHE93_02100) pilB 459244..460956 (-) 1713 WP_259214674.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HHE93_RS02080 (HHE93_02105) - 461275..462696 (+) 1422 WP_259214675.1 O-antigen ligase -
  HHE93_RS02085 (HHE93_02110) - 462744..463166 (-) 423 WP_310454465.1 type IV pilin protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46105.32 Da        Isoelectric Point: 10.2290

>NTDB_id=439506 HHE93_RS02070 WP_259214673.1 457824..459095(-) (pilC) [Shewanella baltica strain 11FHM2]
MATATTTRKPRTKKAEQKSQPKIYTFEWKGVNRDGKKTAGELRGATAAEIRSQLKSQGVTPKSVRKQSSALFKLGDPKIT
PMDIAVMTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGNILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVAILVTSLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIVGGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVSG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=439506 HHE93_RS02070 WP_259214673.1 457824..459095(-) (pilC) [Shewanella baltica strain 11FHM2]
ATGGCTACGGCAACGACAACAAGAAAGCCTCGCACCAAGAAAGCCGAGCAAAAAAGCCAACCCAAAATCTATACTTTCGA
ATGGAAAGGTGTTAATCGCGACGGCAAGAAAACCGCAGGTGAGCTCAGGGGCGCAACCGCAGCCGAAATCCGTAGCCAGT
TAAAATCCCAAGGCGTTACCCCAAAGAGTGTTCGTAAACAGTCCTCTGCGCTATTTAAGTTAGGTGATCCAAAAATCACC
CCTATGGATATTGCTGTAATGACTCGCCAAATTGCGACTATGCTCGCGGCGGGCGTGCCTTTAGTCACCACAATTGAACT
ACTCGGCCGTGGGCACGAGAAAGCTAAGATGCGGGAACTTTTAGGAAATATCCTCAGTGAAATTCAATCGGGTATTCCTT
TATCAGATGCTATGCGCCCCCATAGGCGCTACTTCGATGAGCTATATGTTGACCTAGTTGCAGCAGGCGAGCACTCAGGC
TCACTGGATTTGGTTTTTGATCGCGTGGCGACATACAGAGAAAAAACAGAAGCCCTCAAATCAAAAATTAAGAAGGCCAT
GTTCTATCCAGCAGCAGTTGTCATAGTCGCAATCTTAGTCACATCCTTATTACTGTTGTTTGTGGTACCGCAATTTGAGG
AAATCTTCAAAGGCTTTGGTGCTGAACTGCCCGCCTTTACTCAATTAGTACTGCATATTTCACGCGGCTTACAATCCTCT
TGGTATATATTTTTAGCAGCTATCGTCGGCGGAGTATTTTTGTTCGTTCGAGCCCACCGAAACTCACAAATGGTGAGAGA
TCGAGTAGACGAAGCTGTGCTTAAAATCCCAGCCATTGGGCCTATTTTACACAAAGGTGCGATGGCTCGATTCGCTCGTA
CTTTAGCAACCACTTTCGCCGCCGGCGTGCCGTTAATTGATGGTTTAGAATCCGCAGCTGGCGCATCGGGTAATGCAGTC
TATCGAAAAGCGATTTTAAAAATTCGTCAAGAAGTCATGGCGGGGATGCAGATGAATGTGGCTATGCAGACCACTGGGCT
TTTCCCCGACATGTTAGTGCAAATGGTGATGATAGGCGAAGAATCAGGTTCACTAGATAACATGCTCAATAAAGTCTCTA
CTATCTACGAAATGCAAGTAGACGATGCCGTAGATGGCTTATCAAGCCTGATAGAACCGATTATGATGGTGGTCATCGGT
ACTGTCGTCGGCGGTTTAATTGTTGCTATGTACTTACCTATCTTCCAGATGGGTAAAGTTGTTAGCGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.051

93.617

0.515
  pilC Legionella pneumophila strain ERS1305867

49.136

95.745

0.47
  pilC Acinetobacter baumannii D1279779

50

94.09

0.47
  pilC Acinetobacter baylyi ADP1

49.37

93.853

0.463
  pilC Vibrio cholerae strain A1552

46.985

94.09

0.442
  pilC Vibrio campbellii strain DS40M4

44.581

95.981

0.428
  pilG Neisseria meningitidis 44/76-A

42.432

95.272

0.404
  pilG Neisseria gonorrhoeae MS11

42.432

95.272

0.404