Detailed information NTG0439505

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HHE93_RS02065
• Genome accession: NZ_CP051529
• Coordinates: 456870..457784 (-)
• Length: 304 a.a.
• NCBI ID: WP_259214672.1
• Uniprot ID: -
• Organism: Shewanella baltica strain 11FHM2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 451870..462784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHE93_RS02035 (HHE93_02055)	-	452650..453576 (+)	927	WP_259214667.1	exopolyphosphatase	-
HHE93_RS02040 (HHE93_02060)	-	453641..454177 (-)	537	WP_006084374.1	thioredoxin family protein	-
HHE93_RS02045 (HHE93_02070)	mutT	454734..455126 (-)	393	WP_259214668.1	8-oxo-dGTP diphosphatase MutT	-
HHE93_RS02050 (HHE93_02075)	yacG	455203..455412 (-)	210	WP_006083355.1	DNA gyrase inhibitor YacG	-
HHE93_RS02055 (HHE93_02080)	zapD	455486..456220 (-)	735	WP_259214670.1	cell division protein ZapD	-
HHE93_RS02060 (HHE93_02085)	coaE	456213..456830 (-)	618	WP_259214671.1	dephospho-CoA kinase	-
HHE93_RS02065 (HHE93_02090)	pilD	456870..457784 (-)	915	WP_259214672.1	A24 family peptidase	Machinery gene
HHE93_RS02070 (HHE93_02095)	pilC	457824..459095 (-)	1272	WP_259214673.1	type II secretion system F family protein	Machinery gene
HHE93_RS02075 (HHE93_02100)	pilB	459244..460956 (-)	1713	WP_259214674.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HHE93_RS02080 (HHE93_02105)	-	461275..462696 (+)	1422	WP_259214675.1	O-antigen ligase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 33887.41 Da
• Isoelectric Point: 7.7253

>NTDB_id=439505 HHE93_RS02065 WP_259214672.1 456870..457784(-) (pilD) [Shewanella baltica strain 11FHM2]
MSEFISLLGLHPYLFIALSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEDIVKKIGIDQLNKPIDAFPEKY
NLVVPGSACTKCKTSIKPWHNLPVLGWLMLKGKCAACHAPISARYPIIEFITGLLIATLAWHFGPSWQFVFASILTFVLV
ALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAVFGAW
LGWQMLPLVILLSSLVGAVVGITMIVSKRLKQGNPIPFGPYIAAAGWIALLFGPQIVDWYLSTL

Nucleotide

• Length: 915 bp

>NTDB_id=439505 HHE93_RS02065 WP_259214672.1 456870..457784(-) (pilD) [Shewanella baltica strain 11FHM2]
ATGTCAGAATTCATCTCCCTTTTAGGCCTGCACCCTTATCTCTTTATTGCTCTAAGCTTTATTTTTGCCGCTACCATTGG
TAGTTTTTTAAACGTGGTGATCCACAGATTTCCTGTGATGATGAAACGGGAGTGGCAGCAAGAATGTAATCAGTATTTAC
AGGAATACCACGAAGACATAGTCAAAAAAATAGGGATAGACCAACTCAATAAACCTATAGATGCCTTCCCTGAAAAGTAT
AATCTTGTTGTGCCGGGCTCAGCCTGCACCAAGTGCAAAACGTCGATTAAACCTTGGCATAATTTACCCGTATTAGGCTG
GTTAATGCTCAAGGGAAAATGCGCCGCCTGTCACGCCCCTATTTCTGCTCGCTACCCCATTATTGAATTCATCACAGGGC
TACTTATCGCGACTTTAGCTTGGCATTTTGGTCCAAGCTGGCAGTTTGTTTTTGCGAGCATACTCACCTTTGTGCTTGTA
GCACTGACGGGTATCGATCTTGATGAGATGTTGCTCCCCGACCAAATGACGTTACCGTTACTTTGGCTAGGCTTGATAAT
CAATTTAAATCATACCTTTGCGAGCCCAACCGATGCGATTATCGGTGCGGCGGCAGGCTATTTGAGTCTATGGTCCATAT
TCTGGTTGTTTAAAATCCTCACCGGCAAGGAAGGCATGGGTTATGGTGACTTTAAACTGCTCGCCGTTTTCGGTGCTTGG
CTTGGCTGGCAAATGCTGCCGCTGGTGATTTTACTTTCGTCCCTCGTTGGCGCAGTCGTTGGCATCACTATGATTGTCAG
TAAACGCCTGAAACAAGGGAATCCAATCCCATTTGGCCCCTATATTGCCGCAGCTGGCTGGATAGCCTTGCTATTTGGAC
CGCAGATTGTCGATTGGTACCTATCCACACTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (154-262)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50	99.342	0.497
pilD	Vibrio campbellii strain DS40M4	49.492	97.039	0.48
pilD	Acinetobacter baumannii D1279779	48.958	94.737	0.464
pilD	Acinetobacter nosocomialis M2	48.958	94.737	0.464
pilD	Neisseria gonorrhoeae MS11	43.643	95.724	0.418