Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HGI30_RS12060 Genome accession   NZ_CP051428
Coordinates   2727231..2728478 (-) Length   415 a.a.
NCBI ID   WP_168907789.1    Uniprot ID   A0A6H2GXZ6
Organism   Paenibacillus albicereus strain UniB2     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2722231..2733478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI30_RS12040 (HGI30_12040) - 2722526..2723320 (-) 795 WP_028597364.1 TIGR00282 family metallophosphoesterase -
  HGI30_RS12045 (HGI30_12045) rny 2723382..2724923 (-) 1542 WP_028597365.1 ribonuclease Y -
  HGI30_RS12050 (HGI30_12050) - 2725106..2725789 (-) 684 WP_168907788.1 regulatory protein RecX -
  HGI30_RS12055 (HGI30_12055) recA 2725889..2726971 (-) 1083 WP_028597367.1 recombinase RecA Machinery gene
  HGI30_RS12060 (HGI30_12060) cinA 2727231..2728478 (-) 1248 WP_168907789.1 competence/damage-inducible protein A Machinery gene
  HGI30_RS12065 (HGI30_12065) pgsA 2728557..2729132 (-) 576 WP_168907790.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HGI30_RS12070 (HGI30_12070) - 2729214..2729705 (-) 492 WP_168907791.1 YajQ family cyclic di-GMP-binding protein -
  HGI30_RS12075 (HGI30_12075) - 2729876..2730790 (-) 915 WP_168907792.1 RodZ family helix-turn-helix domain-containing protein -
  HGI30_RS12080 (HGI30_12080) - 2730814..2731578 (-) 765 WP_168907793.1 DUF3388 domain-containing protein -
  HGI30_RS12085 (HGI30_12085) - 2731732..2731983 (-) 252 WP_168907794.1 DUF3243 domain-containing protein -
  HGI30_RS12090 (HGI30_12090) ymfI 2732092..2732823 (-) 732 WP_168907795.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 44678.03 Da        Isoelectric Point: 5.5124

>NTDB_id=438206 HGI30_RS12060 WP_168907789.1 2727231..2728478(-) (cinA) [Paenibacillus albicereus strain UniB2]
MKAEIIAVGTELLLGQIVNTNARYLSQGLAALGIDVFFQTVVGDNDARIRQAIETARSRADLLLFTGGLGPTMDDLTKDV
LAGYLGRRILIHEPTMEAMERFFASRGSHMVESNRRQANWIEGSEPLENEAGLAVGNALEQDGTRYILLPGPPKEMVPMF
EGPATRWLLAEIGAGAPLHSRILRFAGIGESRLEHELIDLIESQSDPTIAPYAKEGEVAIRLSSKSADEAQALDRIERMA
QRIRERLGAHIYAEEDISLEEAVLRRLRTRRMRVSVAESCTGGLLAELITGIPGSSGEFLGGIVTYTNTMKHKLLGIPLA
QLDGPDAPGAVSASTAALMAQRVAETTGSDWGVSVTGVAGPGSSEGKPVGLVYIGIARKGGEVQTHELNAGGNRDMVRIR
AAKHALYRLWLALAE

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=438206 HGI30_RS12060 WP_168907789.1 2727231..2728478(-) (cinA) [Paenibacillus albicereus strain UniB2]
GTGAAAGCCGAAATCATCGCCGTAGGAACGGAACTGCTGCTTGGACAGATCGTCAACACGAACGCCCGCTATCTTTCCCA
GGGCCTCGCTGCCCTCGGCATCGACGTCTTCTTCCAGACTGTCGTCGGCGACAACGACGCCCGCATCCGCCAGGCGATCG
AGACGGCGCGTTCCCGCGCCGACCTGCTGCTGTTCACCGGCGGGCTCGGCCCGACGATGGACGACCTGACCAAAGACGTG
CTTGCCGGCTATCTCGGCCGCCGCATCCTCATCCACGAGCCGACGATGGAAGCGATGGAGCGGTTTTTCGCCTCCCGGGG
CAGCCATATGGTGGAGAGCAATCGCCGGCAGGCCAACTGGATCGAGGGCAGCGAGCCGCTGGAGAACGAGGCGGGGCTTG
CCGTCGGCAATGCGCTGGAGCAGGACGGCACCCGCTACATCCTGCTGCCTGGCCCGCCCAAGGAGATGGTCCCGATGTTC
GAAGGACCGGCGACGCGCTGGCTGCTGGCCGAGATCGGCGCGGGGGCGCCGCTCCACTCCCGCATCCTGCGCTTCGCCGG
CATCGGCGAGTCGCGGCTCGAGCATGAGCTGATCGATCTGATCGAGAGCCAGAGCGATCCGACGATCGCCCCCTATGCCA
AGGAGGGAGAGGTCGCGATCCGCCTCTCCAGCAAGTCTGCCGACGAGGCGCAGGCGCTCGACCGCATCGAGCGCATGGCG
CAGCGGATCCGCGAGCGCCTCGGCGCGCATATCTACGCGGAGGAGGACATCTCGCTCGAGGAGGCGGTGCTGCGAAGGCT
GCGGACGAGGCGGATGCGGGTCAGCGTGGCGGAAAGCTGCACGGGCGGCCTGCTGGCCGAGCTGATTACCGGCATCCCCG
GCAGCAGCGGCGAGTTCCTCGGCGGCATCGTCACGTATACGAATACGATGAAGCACAAGCTGCTCGGCATTCCGCTTGCC
CAGCTGGACGGTCCGGACGCCCCCGGTGCCGTGAGCGCGTCTACCGCGGCGCTGATGGCGCAGCGGGTGGCGGAGACGAC
CGGTAGCGACTGGGGCGTGTCGGTCACCGGCGTGGCGGGACCGGGCTCTTCGGAGGGCAAGCCGGTGGGGCTCGTCTATA
TCGGCATCGCCCGCAAGGGCGGGGAGGTCCAGACGCATGAGCTGAATGCGGGCGGCAACCGCGACATGGTGCGTATCCGC
GCCGCCAAGCACGCCCTGTACCGGCTCTGGCTGGCGCTTGCGGAGTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H2GXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

47.17

100

0.482
  cinA Streptococcus mitis SK321

46.934

100

0.48
  cinA Streptococcus pneumoniae TIGR4

46.698

100

0.477
  cinA Streptococcus pneumoniae Rx1

46.698

100

0.477
  cinA Streptococcus pneumoniae R6

46.698

100

0.477
  cinA Streptococcus pneumoniae D39

46.462

100

0.475
  cinA Bacillus subtilis subsp. subtilis str. 168

45.169

99.759

0.451
  cinA Streptococcus mutans UA159

44.878

98.795

0.443
  cinA Streptococcus suis isolate S10

41.919

95.422

0.4