Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HGI30_RS12055 Genome accession   NZ_CP051428
Coordinates   2725889..2726971 (-) Length   360 a.a.
NCBI ID   WP_028597367.1    Uniprot ID   -
Organism   Paenibacillus albicereus strain UniB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2720889..2731971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI30_RS12030 (HGI30_12030) - 2721029..2722000 (-) 972 WP_235680438.1 dipeptidase -
  HGI30_RS12035 (HGI30_12035) - 2722140..2722400 (-) 261 WP_028597363.1 stage V sporulation protein S -
  HGI30_RS12040 (HGI30_12040) - 2722526..2723320 (-) 795 WP_028597364.1 TIGR00282 family metallophosphoesterase -
  HGI30_RS12045 (HGI30_12045) rny 2723382..2724923 (-) 1542 WP_028597365.1 ribonuclease Y -
  HGI30_RS12050 (HGI30_12050) - 2725106..2725789 (-) 684 WP_168907788.1 regulatory protein RecX -
  HGI30_RS12055 (HGI30_12055) recA 2725889..2726971 (-) 1083 WP_028597367.1 recombinase RecA Machinery gene
  HGI30_RS12060 (HGI30_12060) cinA 2727231..2728478 (-) 1248 WP_168907789.1 competence/damage-inducible protein A Machinery gene
  HGI30_RS12065 (HGI30_12065) pgsA 2728557..2729132 (-) 576 WP_168907790.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HGI30_RS12070 (HGI30_12070) - 2729214..2729705 (-) 492 WP_168907791.1 YajQ family cyclic di-GMP-binding protein -
  HGI30_RS12075 (HGI30_12075) - 2729876..2730790 (-) 915 WP_168907792.1 RodZ family helix-turn-helix domain-containing protein -
  HGI30_RS12080 (HGI30_12080) - 2730814..2731578 (-) 765 WP_168907793.1 DUF3388 domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38665.05 Da        Isoelectric Point: 4.8475

>NTDB_id=438205 HGI30_RS12055 WP_028597367.1 2725889..2726971(-) (recA) [Paenibacillus albicereus strain UniB2]
MKDVDLLSDRRAALDMALRQIEKQFGKGSIMKLGESAQLAVETVSSGALALDIALGIGGFPRGRIIEVYGPESSGKTTVA
LHAIAEVQRTGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIE
GEMGDTHVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIESIKQGTD
VVGNRTRIKVVKNKVAPPFRQAELDIMYGEGISRVGSIIDIGVEMDIVQKSGAWFSYNGDRLGQGRENAKQFLKDNEAVA
GVIEGKIREAHNLNAAADRAAGAEVSKDEEDEFEELELDV

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=438205 HGI30_RS12055 WP_028597367.1 2725889..2726971(-) (recA) [Paenibacillus albicereus strain UniB2]
ATGAAGGATGTGGATCTCTTGTCAGATCGCCGCGCAGCTTTAGATATGGCGCTTCGCCAGATTGAGAAACAGTTCGGAAA
AGGCTCCATCATGAAACTAGGCGAATCCGCCCAGCTGGCCGTAGAGACGGTCTCCAGCGGCGCGCTCGCATTGGATATCG
CGCTCGGCATCGGGGGTTTCCCTCGCGGCCGTATTATTGAAGTCTATGGACCGGAATCGTCCGGCAAGACGACCGTCGCC
CTGCACGCGATCGCCGAAGTGCAGCGCACGGGCGGACAAGCCGCCTTCATCGACGCGGAGCATGCGCTGGATCCTCTCTA
TGCCAGCAAGCTCGGCGTCAACATCGACGAGCTGCTGCTGTCCCAGCCGGATACGGGCGAGCAGGCGCTGGAGATCGCCG
AGGCGCTCGTGCGCAGCGGCGCCGTCGACATCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAG
GGCGAGATGGGCGACACCCACGTCGGCCTGCAGGCGCGCCTCATGTCGCAGGCGCTGCGCAAGCTGTCCGGAGCGATCAG
CAAGTCCAAGACGATCGCCATCTTCATCAACCAGCTCCGCGAGAAGGTCGGCGTCATGTTCGGCAACCCGGAGACGACTC
CAGGCGGACGCGCCCTGAAGTTCTACAGCAGCGTGCGTCTGGACGTGCGCCGCATCGAGAGCATCAAGCAAGGCACGGAC
GTCGTGGGCAACCGGACCCGCATCAAGGTCGTCAAGAACAAGGTCGCGCCTCCGTTCCGTCAGGCCGAGCTGGACATCAT
GTACGGCGAAGGCATTTCCCGCGTCGGTAGCATCATCGACATCGGCGTGGAGATGGACATCGTGCAGAAGAGCGGCGCCT
GGTTCAGCTATAACGGCGACCGTCTGGGCCAAGGACGGGAGAATGCCAAGCAGTTCCTCAAGGACAACGAGGCGGTCGCG
GGCGTGATTGAAGGCAAGATTCGCGAAGCGCACAACCTCAACGCGGCTGCGGACCGCGCCGCCGGCGCCGAAGTCTCCAA
GGACGAGGAGGACGAGTTCGAGGAGCTGGAGCTCGACGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.707

91.111

0.744
  recA Latilactobacillus sakei subsp. sakei 23K

73.006

90.556

0.661
  recA Streptococcus mitis SK321

63.989

100

0.642
  recA Streptococcus pyogenes NZ131

65.07

98.611

0.642
  recA Streptococcus mutans UA159

64.067

99.722

0.639
  recA Streptococcus mitis NCTC 12261

63.712

100

0.639
  recA Streptococcus pneumoniae D39

62.431

100

0.628
  recA Streptococcus pneumoniae Rx1

62.431

100

0.628
  recA Streptococcus pneumoniae R6

62.431

100

0.628
  recA Streptococcus pneumoniae TIGR4

62.431

100

0.628
  recA Lactococcus lactis subsp. cremoris KW2

67.576

91.667

0.619
  recA Ralstonia pseudosolanacearum GMI1000

66.159

91.111

0.603
  recA Neisseria gonorrhoeae MS11

63.529

94.444

0.6
  recA Neisseria gonorrhoeae strain FA1090

63.529

94.444

0.6
  recA Neisseria gonorrhoeae MS11

63.529

94.444

0.6
  recA Glaesserella parasuis strain SC1401

61.538

97.5

0.6
  recA Vibrio cholerae strain A1552

66.355

89.167

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

89.167

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.632

96.667

0.586
  recA Acinetobacter baylyi ADP1

60.694

96.111

0.583
  recA Pseudomonas stutzeri DSM 10701

62.952

92.222

0.581
  recA Acinetobacter baumannii D1279779

63.863

89.167

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

90.833

0.569
  recA Helicobacter pylori 26695

62.848

89.722

0.564
  recA Helicobacter pylori strain NCTC11637

62.539

89.722

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.092

85

0.528