Detailed information NTG0437620

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: IM720_RS05315
• Genome accession: NZ_CP063233
• Coordinates: 1201679..1202887 (-)
• Length: 402 a.a.
• NCBI ID: WP_193690171.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain KF1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1196679..1207887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM720_RS05275 (IM720_05275)	-	1197564..1197737 (-)	174	WP_024073379.1	DUF3094 family protein	-
IM720_RS05280 (IM720_05280)	-	1197827..1198456 (-)	630	WP_017845475.1	DUF1780 domain-containing protein	-
IM720_RS05285 (IM720_05285)	-	1198557..1199024 (+)	468	WP_069075203.1	FAD/FMN-containing dehydrogenase	-
IM720_RS05290 (IM720_05290)	-	1199021..1199710 (+)	690	WP_024073381.1	energy-coupling factor ABC transporter permease	-
IM720_RS05295 (IM720_05295)	-	1199787..1200002 (+)	216	WP_003171680.1	hypothetical protein	-
IM720_RS05300 (IM720_05300)	yacG	1199999..1200199 (-)	201	WP_017845472.1	DNA gyrase inhibitor YacG	-
IM720_RS05305 (IM720_05305)	coaE	1200196..1200819 (-)	624	WP_024073382.1	dephospho-CoA kinase	-
IM720_RS05310 (IM720_05310)	pilD	1200816..1201682 (-)	867	WP_069075202.1	prepilin peptidase	Machinery gene
IM720_RS05315 (IM720_05315)	pilC	1201679..1202887 (-)	1209	WP_193690171.1	type II secretion system F family protein	Machinery gene
IM720_RS05320 (IM720_05320)	pilA/pilAI	1203089..1203502 (+)	414	WP_024073385.1	pilin	Machinery gene
IM720_RS05325 (IM720_05325)	-	1203537..1204946 (+)	1410	WP_193690172.1	O-antigen ligase family protein	-
IM720_RS05335 (IM720_05335)	-	1205209..1205514 (+)	306	WP_024073387.1	DUF6388 family protein	-
IM720_RS05340 (IM720_05340)	nadC	1205636..1206484 (-)	849	WP_150054127.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 43305.57 Da
• Isoelectric Point: 9.9822

>NTDB_id=437620 IM720_RS05315 WP_193690171.1 1201679..1202887(-) (pilC) [Pseudomonas fluorescens strain KF1]
MDNASRTYAWEGTNRQGHRVSGHTTGHNLALIKAKLRQQGIRPSSVRRQFPGLACLAAPIKPTDIALLTRQLATLLKAGI
PLLQAFDIISDGFESRPMQELLKGLTQDIAAGTALATALRKQPRYFDDLYCNLIAAGEQAGALETLLERVATHLEKSEQL
KARIKKAMTYPIAVLVVASLVSSILLIHVVPQFQNLFAGVDRQLPGFTLHVIGLSTFMQQAWWALALGLGAGFFALRHAY
RVAPGFRQGLDTGLLKAPLAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAGAVGNGPYKQAIKHMRHEVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLERMLEKVANHYESEVDNLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGT
AF

Nucleotide

• Length: 1209 bp

>NTDB_id=437620 IM720_RS05315 WP_193690171.1 1201679..1202887(-) (pilC) [Pseudomonas fluorescens strain KF1]
ATGGACAACGCTTCAAGGACCTACGCGTGGGAAGGCACCAACCGCCAGGGGCACAGGGTGTCCGGGCACACCACGGGCCA
CAACCTCGCCCTGATCAAGGCAAAGCTGCGCCAGCAAGGGATCCGCCCCAGCAGCGTGCGCAGGCAATTCCCCGGCCTGG
CCTGCCTCGCCGCGCCGATCAAACCCACTGACATCGCCCTGCTCACCCGCCAGTTGGCGACCTTGCTGAAAGCCGGCATT
CCTCTGCTGCAAGCCTTCGACATCATCAGCGACGGCTTCGAGAGCCGGCCGATGCAGGAACTGCTCAAGGGGTTGACGCA
GGACATCGCCGCCGGCACCGCACTGGCGACCGCGCTGCGCAAACAGCCACGCTATTTCGATGACCTGTACTGCAACCTGA
TTGCCGCCGGCGAACAGGCCGGGGCATTGGAAACGCTGTTGGAGCGCGTTGCCACTCACCTGGAAAAGAGTGAGCAGCTA
AAGGCGCGAATCAAGAAAGCCATGACCTACCCGATCGCCGTCCTGGTGGTGGCGAGCCTGGTCAGCAGCATCCTGCTGAT
CCACGTAGTGCCGCAATTTCAGAACCTGTTCGCCGGAGTCGACCGACAGTTGCCCGGTTTTACCCTGCACGTCATCGGCC
TGTCCACGTTCATGCAGCAAGCCTGGTGGGCTCTGGCGCTTGGCCTCGGGGCCGGTTTTTTCGCGCTGCGCCACGCCTAT
CGCGTAGCCCCTGGCTTTCGTCAGGGGCTGGATACGGGTTTGTTGAAAGCCCCCTTGGCAGGCACACTGCTGAAGAAATC
GGCCGTGGCACGCTATGCCCGCACGCTTTCCACCACGTTCGCGGCTGGGGTGCCGCTGGTACAGGCATTGGATTCAGTGG
CAGGTGCCGTCGGCAACGGGCCGTACAAGCAGGCGATCAAACATATGCGTCATGAGGTATCCACAGGCATGCAGTTGAAC
CAATCCATGGCCGCCAGCGGTCTCTTTCCAGGCATGGCAATTCAGATGACGGCCATCGGCGAGGAGTCGGGCACACTCGA
GCGCATGCTGGAAAAAGTCGCGAACCACTATGAATCGGAAGTCGACAACCTGGTCGACAACCTCACCAGCCTGATGGAGC
CGCTGATAATGGTGGTGCTGGGGGGCATTGTCGGGGCGCTGGTAATTGCGATGTACCTGCCGGTCTTCCAACTCGGTACA
GCGTTTTGA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (69-191)

• Type II secretion system (T2SS), protein F (T2SSF) (273-394)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	57.071	98.507	0.562
pilC	Acinetobacter baylyi ADP1	51.759	99.005	0.512
pilC	Acinetobacter baumannii D1279779	49.747	98.507	0.49
pilC	Legionella pneumophila strain ERS1305867	48.99	98.507	0.483
pilC	Vibrio cholerae strain A1552	40.351	99.254	0.4
pilG	Neisseria gonorrhoeae MS11	38.539	98.756	0.381
pilC	Vibrio campbellii strain DS40M4	38.442	99.005	0.381
pilC	Thermus thermophilus HB27	37.656	99.751	0.376
pilG	Neisseria meningitidis 44/76-A	38.035	98.756	0.376