Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | IM720_RS05310 | Genome accession | NZ_CP063233 |
| Coordinates | 1200816..1201682 (-) | Length | 288 a.a. |
| NCBI ID | WP_069075202.1 | Uniprot ID | - |
| Organism | Pseudomonas fluorescens strain KF1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1195816..1206682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IM720_RS05270 (IM720_05270) | - | 1196205..1197503 (-) | 1299 | WP_193690170.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| IM720_RS05275 (IM720_05275) | - | 1197564..1197737 (-) | 174 | WP_024073379.1 | DUF3094 family protein | - |
| IM720_RS05280 (IM720_05280) | - | 1197827..1198456 (-) | 630 | WP_017845475.1 | DUF1780 domain-containing protein | - |
| IM720_RS05285 (IM720_05285) | - | 1198557..1199024 (+) | 468 | WP_069075203.1 | FAD/FMN-containing dehydrogenase | - |
| IM720_RS05290 (IM720_05290) | - | 1199021..1199710 (+) | 690 | WP_024073381.1 | energy-coupling factor ABC transporter permease | - |
| IM720_RS05295 (IM720_05295) | - | 1199787..1200002 (+) | 216 | WP_003171680.1 | hypothetical protein | - |
| IM720_RS05300 (IM720_05300) | yacG | 1199999..1200199 (-) | 201 | WP_017845472.1 | DNA gyrase inhibitor YacG | - |
| IM720_RS05305 (IM720_05305) | coaE | 1200196..1200819 (-) | 624 | WP_024073382.1 | dephospho-CoA kinase | - |
| IM720_RS05310 (IM720_05310) | pilD | 1200816..1201682 (-) | 867 | WP_069075202.1 | prepilin peptidase | Machinery gene |
| IM720_RS05315 (IM720_05315) | pilC | 1201679..1202887 (-) | 1209 | WP_193690171.1 | type II secretion system F family protein | Machinery gene |
| IM720_RS05320 (IM720_05320) | pilA/pilAI | 1203089..1203502 (+) | 414 | WP_024073385.1 | pilin | Machinery gene |
| IM720_RS05325 (IM720_05325) | - | 1203537..1204946 (+) | 1410 | WP_193690172.1 | O-antigen ligase family protein | - |
| IM720_RS05335 (IM720_05335) | - | 1205209..1205514 (+) | 306 | WP_024073387.1 | DUF6388 family protein | - |
| IM720_RS05340 (IM720_05340) | nadC | 1205636..1206484 (-) | 849 | WP_150054127.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31860.16 Da Isoelectric Point: 7.0716
>NTDB_id=437619 IM720_RS05310 WP_069075202.1 1200816..1201682(-) (pilD) [Pseudomonas fluorescens strain KF1]
MNLLLTEQPWAFVAVALVLGLIIGSFLNVLVWRLPKMLEREWRAQALEVLGMPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLMLRGRCAHCQQPISARYPITELACGLISAMVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDILVLP
LLWLGLIINSADLLTALPDALWGAVIGYLSLWTVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVI
VGLILMRLRKAEISAPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFR
MNLLLTEQPWAFVAVALVLGLIIGSFLNVLVWRLPKMLEREWRAQALEVLGMPADPAGPTYNLMHPNSCCPHCNHPIRPW
ENIPLLSYLMLRGRCAHCQQPISARYPITELACGLISAMVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDILVLP
LLWLGLIINSADLLTALPDALWGAVIGYLSLWTVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVI
VGLILMRLRKAEISAPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFR
Nucleotide
Download Length: 867 bp
>NTDB_id=437619 IM720_RS05310 WP_069075202.1 1200816..1201682(-) (pilD) [Pseudomonas fluorescens strain KF1]
TTGAACCTGCTGCTGACTGAGCAGCCATGGGCGTTTGTCGCAGTGGCCCTGGTACTGGGGCTGATCATCGGTAGCTTCCT
CAATGTACTGGTATGGCGCCTGCCGAAAATGCTTGAGCGGGAATGGCGCGCACAAGCCCTTGAAGTGCTCGGCATGCCCG
CCGACCCCGCCGGGCCCACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCACTGCAATCACCCGATTCGCCCGTGG
GAGAATATCCCGCTGCTCAGCTACCTCATGCTCCGGGGGCGTTGCGCCCATTGTCAGCAGCCGATCAGTGCACGCTACCC
CATCACTGAACTGGCCTGCGGGCTGATCTCGGCCATGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCCGGGGCAGTCA
TGTTGTTGAGCTGGGGGCTGCTGGCAATGAGCCTGATCGATGTGGATCACCAACTGCTACCCGATATCCTGGTCCTGCCG
CTGCTGTGGCTGGGGCTGATCATCAACAGCGCCGACCTGCTGACCGCACTGCCGGACGCACTGTGGGGCGCGGTGATCGG
CTACCTAAGTCTGTGGACAGTGTTCTGGCTGTTCAAACTGGTGACCGGCAAGGACGGCATGGGCCATGGTGACTTCAAGT
TATTGGCGCTGCTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACGCTACTGATGTCTTCGCTGGTGGGCGTGATC
GTAGGGCTGATTCTGATGCGCTTGCGCAAGGCTGAGATCTCGGCACCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
TTGAACCTGCTGCTGACTGAGCAGCCATGGGCGTTTGTCGCAGTGGCCCTGGTACTGGGGCTGATCATCGGTAGCTTCCT
CAATGTACTGGTATGGCGCCTGCCGAAAATGCTTGAGCGGGAATGGCGCGCACAAGCCCTTGAAGTGCTCGGCATGCCCG
CCGACCCCGCCGGGCCCACCTACAACCTGATGCACCCCAACTCCTGCTGCCCGCACTGCAATCACCCGATTCGCCCGTGG
GAGAATATCCCGCTGCTCAGCTACCTCATGCTCCGGGGGCGTTGCGCCCATTGTCAGCAGCCGATCAGTGCACGCTACCC
CATCACTGAACTGGCCTGCGGGCTGATCTCGGCCATGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCCGGGGCAGTCA
TGTTGTTGAGCTGGGGGCTGCTGGCAATGAGCCTGATCGATGTGGATCACCAACTGCTACCCGATATCCTGGTCCTGCCG
CTGCTGTGGCTGGGGCTGATCATCAACAGCGCCGACCTGCTGACCGCACTGCCGGACGCACTGTGGGGCGCGGTGATCGG
CTACCTAAGTCTGTGGACAGTGTTCTGGCTGTTCAAACTGGTGACCGGCAAGGACGGCATGGGCCATGGTGACTTCAAGT
TATTGGCGCTGCTTGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACGCTACTGATGTCTTCGCTGGTGGGCGTGATC
GTAGGGCTGATTCTGATGCGCTTGCGCAAGGCTGAGATCTCGGCACCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.317 |
96.528 |
0.524 |
| pilD | Vibrio campbellii strain DS40M4 |
51.254 |
96.875 |
0.497 |
| pilD | Acinetobacter nosocomialis M2 |
51.282 |
94.792 |
0.486 |
| pilD | Acinetobacter baumannii D1279779 |
51.282 |
94.792 |
0.486 |
| pilD | Neisseria gonorrhoeae MS11 |
49.259 |
93.75 |
0.462 |