Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HER31_RS17575 Genome accession   NZ_CP051180
Coordinates   3867582..3868865 (-) Length   427 a.a.
NCBI ID   WP_168662616.1    Uniprot ID   A0A6H1UI96
Organism   Ferrimonas lipolytica strain S7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3862582..3873865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HER31_RS17545 (HER31_17545) - 3863110..3863496 (+) 387 WP_168662604.1 (deoxy)nucleoside triphosphate pyrophosphohydrolase -
  HER31_RS17550 (HER31_17550) - 3863435..3865102 (-) 1668 WP_168662606.1 PglL family O-oligosaccharyltransferase -
  HER31_RS17555 (HER31_17555) yacG 3865108..3865317 (-) 210 WP_168662608.1 DNA gyrase inhibitor YacG -
  HER31_RS17560 (HER31_17560) zapD 3865314..3866063 (-) 750 WP_168662610.1 cell division protein ZapD -
  HER31_RS17565 (HER31_17565) coaE 3866068..3866670 (-) 603 WP_168662612.1 dephospho-CoA kinase -
  HER31_RS17570 (HER31_17570) pilD 3866667..3867548 (-) 882 WP_168662614.1 prepilin peptidase Machinery gene
  HER31_RS17575 (HER31_17575) pilC 3867582..3868865 (-) 1284 WP_168662616.1 type II secretion system F family protein Machinery gene
  HER31_RS17580 (HER31_17580) pilB 3868889..3870409 (-) 1521 Protein_3357 type IV-A pilus assembly ATPase PilB -
  HER31_RS18945 (HER31_17585) pilA/pilAI 3870478..3870897 (-) 420 WP_168662620.1 pilin Machinery gene
  HER31_RS17590 (HER31_17590) nadC 3871175..3872023 (-) 849 WP_168662622.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HER31_RS17595 (HER31_17595) - 3872028..3872537 (-) 510 WP_168662624.1 retropepsin-like aspartic protease family protein -
  HER31_RS17600 (HER31_17600) ampD 3872599..3873165 (+) 567 WP_168662626.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 46810.18 Da        Isoelectric Point: 9.8694

>NTDB_id=436677 HER31_RS17575 WP_168662616.1 3867582..3868865(-) (pilC) [Ferrimonas lipolytica strain S7]
MAKVFQARSSADQRQQKKAKLDKSKKAEVSDFVWSGKNQKGNPLKGELRGASINEVKAILRSQGVTPLKVARKPRSLFQK
KSKITSKDIAVVTRQIATMLMAGVPLVTGLDMVAKGHENEAMRKLLGKILEEIQAGTPVAQALRPHREHFDELYCDLVSA
GEQSGTLDSVFDRIATYREKSEALKSKIKKAMFYPVAVVTVAIIVTLILLIFVVPQFEAIFNDFGAELPAFTQMVIGLSK
FIQSSWYYFLGVAMIIVWLYKRAYHNSPEFRDKVDVVLLKIPVVGNILHKGAMAKFARTLATTFAAGVPLVEGLDASAGA
SGNAVYRKGILKMKEEVVSGLQMNIAMRTVNLFPDMVTQMVMIGEESGALDDMLNKVANIFEMEVDDAVDGLSTLIEPLL
MVVLGVLVGGLIIAMYLPIFELGNVVG

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=436677 HER31_RS17575 WP_168662616.1 3867582..3868865(-) (pilC) [Ferrimonas lipolytica strain S7]
ATGGCTAAGGTTTTTCAGGCGCGCAGCAGTGCCGATCAACGGCAACAAAAAAAAGCAAAACTGGATAAGTCGAAGAAAGC
CGAAGTCAGCGATTTCGTATGGTCTGGCAAAAACCAAAAGGGCAATCCGCTCAAAGGCGAGCTGCGCGGCGCCTCCATTA
ATGAAGTTAAAGCGATATTACGCTCCCAAGGCGTCACTCCGCTCAAGGTCGCCCGCAAACCCCGTTCGCTATTTCAAAAA
AAATCTAAGATCACCTCTAAAGATATCGCCGTAGTTACCCGCCAGATAGCAACCATGTTGATGGCCGGTGTACCACTGGT
TACCGGCCTCGATATGGTCGCCAAAGGCCATGAAAATGAAGCGATGCGGAAACTGCTGGGCAAGATTTTAGAAGAGATCC
AAGCGGGCACTCCAGTTGCGCAAGCATTGCGGCCCCACCGCGAGCACTTTGATGAGCTTTACTGTGACTTAGTTTCGGCC
GGTGAACAGTCCGGTACCTTGGACAGCGTATTTGACCGTATCGCCACCTATCGAGAAAAGTCGGAAGCGCTCAAATCCAA
AATTAAAAAGGCGATGTTTTATCCGGTTGCGGTGGTTACCGTTGCCATTATCGTTACCTTAATCCTATTGATATTTGTGG
TACCTCAATTTGAGGCGATATTTAACGACTTTGGTGCTGAGCTGCCTGCCTTTACCCAGATGGTTATCGGTTTATCCAAA
TTCATTCAAAGCAGTTGGTATTACTTCCTTGGGGTAGCAATGATCATCGTATGGCTCTACAAACGGGCCTATCATAACTC
GCCAGAGTTTCGCGATAAGGTCGATGTGGTGCTATTAAAAATTCCAGTGGTTGGTAATATTTTACATAAAGGGGCAATGG
CAAAGTTTGCCCGAACTCTGGCGACTACCTTTGCTGCTGGTGTCCCTCTAGTAGAAGGTTTAGACGCCTCTGCTGGTGCC
TCGGGTAATGCGGTCTACCGCAAAGGGATCCTCAAAATGAAAGAGGAAGTAGTCTCCGGCTTACAAATGAACATTGCCAT
GCGTACCGTAAACCTGTTCCCCGATATGGTTACTCAGATGGTGATGATTGGTGAAGAGTCTGGTGCCTTAGACGATATGC
TCAATAAGGTCGCTAACATATTTGAAATGGAAGTAGATGATGCTGTTGATGGCTTATCAACCTTGATCGAACCGCTATTA
ATGGTTGTCCTGGGAGTATTGGTCGGCGGCCTTATTATCGCTATGTACCTGCCGATATTCGAATTAGGTAACGTAGTCGG
TTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(296-418)

Type II secretion system (T2SS), protein F (T2SSF)

(93-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H1UI96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.675

92.974

0.527
  pilC Legionella pneumophila strain ERS1305867

51.515

92.74

0.478
  pilC Acinetobacter baumannii D1279779

50.37

94.848

0.478
  pilC Acinetobacter baylyi ADP1

49.754

95.082

0.473
  pilC Vibrio campbellii strain DS40M4

45.209

95.316

0.431
  pilC Vibrio cholerae strain A1552

45.5

93.677

0.426
  pilG Neisseria meningitidis 44/76-A

41.919

92.74

0.389
  pilG Neisseria gonorrhoeae MS11

41.919

92.74

0.389