Detailed information NTG0436676

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HER31_RS17570
• Genome accession: NZ_CP051180
• Coordinates: 3866667..3867548 (-)
• Length: 293 a.a.
• NCBI ID: WP_168662614.1
• Uniprot ID: A0A6H1UHG5
• Organism: Ferrimonas lipolytica strain S7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3861667..3872548

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HER31_RS17545 (HER31_17545)	-	3863110..3863496 (+)	387	WP_168662604.1	(deoxy)nucleoside triphosphate pyrophosphohydrolase	-
HER31_RS17550 (HER31_17550)	-	3863435..3865102 (-)	1668	WP_168662606.1	PglL family O-oligosaccharyltransferase	-
HER31_RS17555 (HER31_17555)	yacG	3865108..3865317 (-)	210	WP_168662608.1	DNA gyrase inhibitor YacG	-
HER31_RS17560 (HER31_17560)	zapD	3865314..3866063 (-)	750	WP_168662610.1	cell division protein ZapD	-
HER31_RS17565 (HER31_17565)	coaE	3866068..3866670 (-)	603	WP_168662612.1	dephospho-CoA kinase	-
HER31_RS17570 (HER31_17570)	pilD	3866667..3867548 (-)	882	WP_168662614.1	prepilin peptidase	Machinery gene
HER31_RS17575 (HER31_17575)	pilC	3867582..3868865 (-)	1284	WP_168662616.1	type II secretion system F family protein	Machinery gene
HER31_RS17580 (HER31_17580)	pilB	3868889..3870409 (-)	1521	Protein_3357	type IV-A pilus assembly ATPase PilB	-
HER31_RS18945 (HER31_17585)	pilA/pilAI	3870478..3870897 (-)	420	WP_168662620.1	pilin	Machinery gene
HER31_RS17590 (HER31_17590)	nadC	3871175..3872023 (-)	849	WP_168662622.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HER31_RS17595 (HER31_17595)	-	3872028..3872537 (-)	510	WP_168662624.1	retropepsin-like aspartic protease family protein	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32135.19 Da
• Isoelectric Point: 6.4628

>NTDB_id=436676 HER31_RS17570 WP_168662614.1 3866667..3867548(-) (pilD) [Ferrimonas lipolytica strain S7]
MAMWLELFAQYNWLFLGVIGTVSLLIGSFLNVVIHRLPIMMERQWLQECAEGLATTPAKDEWPERYNLITPGSNCPKCQA
DIPAWRNIPLISYLSQRGKCHNCHSPISIRYPLVELLTALLCVAVAAKLGPTGLFLGTWLLCFGLIAAAAIDFDKMLLPD
SITLPLLWLGLLLNIDTGFVTLADAVLGAAFGYLSLWSIFQGFKLLTGKEGMGYGDFKLLALFGAWFGWQALLPIILISS
IGGAVVGIALTVTSKLDQGKPMPFGPWIIIGGLSYLFYGPELVNWYLHSVVGL

Nucleotide

• Length: 882 bp

>NTDB_id=436676 HER31_RS17570 WP_168662614.1 3866667..3867548(-) (pilD) [Ferrimonas lipolytica strain S7]
ATGGCGATGTGGCTAGAGCTTTTTGCTCAATACAATTGGCTCTTTTTAGGTGTAATTGGCACCGTTAGTTTGCTTATTGG
CAGTTTTCTCAATGTGGTTATCCATCGTTTACCTATTATGATGGAGCGACAATGGCTACAAGAGTGCGCCGAAGGGCTTG
CAACCACCCCTGCCAAAGATGAATGGCCAGAGCGATACAATCTCATCACTCCAGGTAGTAATTGCCCTAAATGCCAAGCT
GACATACCAGCTTGGCGTAACATCCCCTTAATCAGCTACCTATCGCAACGGGGCAAATGCCACAATTGCCATAGCCCAAT
CTCGATTCGCTACCCGTTAGTAGAACTTCTCACGGCACTGCTGTGTGTTGCTGTTGCCGCGAAACTTGGCCCAACGGGAC
TGTTTCTAGGTACTTGGTTACTGTGCTTTGGCTTGATTGCTGCTGCTGCCATCGACTTTGACAAGATGTTGCTTCCAGAC
AGCATCACCTTGCCACTGCTTTGGCTGGGGTTGTTGCTCAATATAGACACGGGCTTTGTAACACTCGCTGATGCGGTATT
AGGGGCTGCATTTGGTTACCTATCGCTCTGGTCTATCTTTCAAGGCTTTAAACTACTCACTGGCAAAGAGGGCATGGGAT
ATGGCGACTTTAAGCTATTAGCCTTGTTCGGCGCCTGGTTTGGCTGGCAGGCACTATTACCGATTATTCTGATTTCATCC
ATCGGCGGTGCTGTTGTTGGAATTGCTCTAACCGTAACCAGCAAACTTGACCAAGGTAAGCCGATGCCGTTTGGACCATG
GATTATTATTGGCGGATTAAGTTACCTATTTTACGGCCCAGAGTTGGTTAACTGGTATCTGCATAGCGTGGTTGGCTTAT
GA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-128)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

3D structure

• AlphaFold DB: A0A6H1UHG5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.32	100	0.495
pilD	Vibrio campbellii strain DS40M4	48.11	99.317	0.478
pilD	Neisseria gonorrhoeae MS11	49.064	91.126	0.447
pilD	Acinetobacter baumannii D1279779	48.148	92.15	0.444
pilD	Acinetobacter nosocomialis M2	47.778	92.15	0.44