NTDB

Overview

Name	comGC	Type	Machinery gene
Locus tag	HF583_RS06840	Genome accession	NZ_CP051149
Coordinates	1421861..1422184 (+)	Length	107 a.a.
NCBI ID	WP_015729165.1	Uniprot ID	-
Organism	Staphylococcus pseudintermedius strain 6109
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1416861..1427184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF583_RS06815 (HF583_06795)	-	1417235..1418386 (+)	1152	WP_015729170.1	SNF2-related protein	-
HF583_RS06820 (HF583_06800)	-	1418386..1419675 (+)	1290	WP_049770165.1	DUF3440 domain-containing protein	-
HF583_RS06825 (HF583_06805)	-	1419669..1420175 (+)	507	WP_198463136.1	ParB/RepB/Spo0J family partition protein	-
HF583_RS06830 (HF583_06810)	comGA	1420288..1420812 (+)	525	WP_256726570.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
HF583_RS06835 (HF583_06815)	comGB	1420781..1421848 (+)	1068	WP_037542939.1	competence type IV pilus assembly protein ComGB	-
HF583_RS06840 (HF583_06820)	comGC	1421861..1422184 (+)	324	WP_015729165.1	competence type IV pilus major pilin ComGC	Machinery gene
HF583_RS06845 (HF583_06825)	comGD	1422162..1422602 (+)	441	WP_014613823.1	competence type IV pilus minor pilin ComGD	-
HF583_RS06850 (HF583_06830)	-	1422707..1422907 (+)	201	WP_020219623.1	hypothetical protein	-
HF583_RS06855 (HF583_06835)	-	1422813..1423298 (+)	486	WP_081378286.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HF583_RS06860 (HF583_06840)	-	1423462..1423989 (+)	528	WP_014613826.1	shikimate kinase	-
HF583_RS06865 (HF583_06845)	gcvT	1424147..1425238 (+)	1092	WP_015729161.1	glycine cleavage system aminomethyltransferase GcvT	-
HF583_RS06870 (HF583_06850)	gcvPA	1425251..1426600 (+)	1350	WP_014613828.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

Download Length: 107 a.a. Molecular weight: 12027.26 Da Isoelectric Point: 9.0966

                                >NTDB_id=436238 HF583_RS06840 WP_015729165.1 1421861..1422184(+) (comGC) [Staphylococcus pseudintermedius strain 6109]

MIQQLKLKFNKKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR

EGYIKESQKTCKSGEEITIRDGEAVAS

Nucleotide

Download Length: 324 bp

                                >NTDB_id=436238 HF583_RS06840 WP_015729165.1 1421861..1422184(+) (comGC) [Staphylococcus pseudintermedius strain 6109]

ATGATTCAACAACTTAAATTAAAATTCAACAAAAAGAAAGGTTTTACATTAATTGAAATGCTACTTGTTCTGTTAATTAT

TAGTGTACTATTGATTCTCATTATCCCGAATATTGCTAAGCAGTCAGATCATATCCAAAAAACGGGTTGTGCTGCACAAT

TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTTCGT

GAAGGCTACATTAAAGAAAGTCAAAAAACATGCAAATCAGGTGAAGAGATCACAATCAGAGATGGCGAAGCAGTTGCGTC

ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGC	Staphylococcus aureus MW2	73.529	95.327	0.701
comGC	Staphylococcus aureus N315	73.529	95.327	0.701
comGC/cglC	Streptococcus mitis SK321	44.898	91.589	0.411
comGC/cglC	Streptococcus pneumoniae D39	43.878	91.589	0.402
comGC/cglC	Streptococcus pneumoniae TIGR4	43.878	91.589	0.402
comGC/cglC	Streptococcus pneumoniae Rx1	43.878	91.589	0.402
comGC/cglC	Streptococcus pneumoniae R6	43.878	91.589	0.402
comYC	Streptococcus suis isolate S10	53.846	72.897	0.393
comYC	Streptococcus gordonii str. Challis substr. CH1	49.398	77.57	0.383
comGC	Bacillus subtilis subsp. subtilis str. 168	44.565	85.981	0.383
comGC/cglC	Streptococcus mitis NCTC 12261	48.78	76.636	0.374
comGC	Lactococcus lactis subsp. cremoris KW2	48.78	76.636	0.374

Detailed information NTG0436238