Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FOB43_RS13245 Genome accession   NZ_CP050992
Coordinates   2783395..2784618 (+) Length   407 a.a.
NCBI ID   WP_011137374.1    Uniprot ID   -
Organism   Chromobacterium violaceum strain FDAARGOS_635     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2778395..2789618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB43_RS13225 (FOB43_13225) ccsA 2778674..2779495 (+) 822 WP_011137379.1 cytochrome c biogenesis protein CcsA -
  FOB43_RS13230 (FOB43_13230) - 2779564..2779881 (+) 318 WP_011137378.1 helix-hairpin-helix domain-containing protein -
  FOB43_RS13235 (FOB43_13235) - 2780288..2781394 (+) 1107 WP_168227889.1 porin -
  FOB43_RS13240 (FOB43_13240) pilF 2781563..2783269 (+) 1707 WP_168227890.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FOB43_RS13245 (FOB43_13245) pilC 2783395..2784618 (+) 1224 WP_011137374.1 type II secretion system F family protein Machinery gene
  FOB43_RS13250 (FOB43_13250) - 2784630..2785535 (+) 906 WP_168227891.1 A24 family peptidase -
  FOB43_RS13255 (FOB43_13255) coaE 2785520..2786134 (+) 615 WP_011137372.1 dephospho-CoA kinase -
  FOB43_RS13260 (FOB43_13260) zapD 2786171..2786929 (+) 759 WP_031297029.1 cell division protein ZapD -
  FOB43_RS13265 (FOB43_13265) yacG 2786935..2787126 (+) 192 WP_168227892.1 DNA gyrase inhibitor YacG -
  FOB43_RS13270 (FOB43_13270) - 2787194..2788435 (-) 1242 WP_168227893.1 N-acetylmuramoyl-L-alanine amidase -
  FOB43_RS13275 (FOB43_13275) tsaE 2788393..2788887 (-) 495 WP_210425956.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44911.77 Da        Isoelectric Point: 10.0089

>NTDB_id=435802 FOB43_RS13245 WP_011137374.1 2783395..2784618(+) (pilC) [Chromobacterium violaceum strain FDAARGOS_635]
MATTAAKKANPGYIWEWEGKDKSGKMIRGELRAESEAVAKTQLRRQGINVAKIRRRRSGFGKKITEKDITLFTRQLSTMM
RAGVPLLQAFDIAAKGHSNPAVTRMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNIIAAGEAGGVLDTLLDKLATYKEK
VMAIKSKIKSAMIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHFWWLIFGTLFGAIFAF
FYAFKRTPKMQEQMDRILLRLPVIGDIIRKATIARWARTLSTLFSAGVPLVEALDSVGGAAGNQVYAEATRRIQADVSTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLVIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=435802 FOB43_RS13245 WP_011137374.1 2783395..2784618(+) (pilC) [Chromobacterium violaceum strain FDAARGOS_635]
ATGGCGACCACGGCAGCCAAAAAGGCGAATCCGGGCTACATCTGGGAATGGGAAGGCAAGGACAAGTCCGGCAAGATGAT
ACGGGGCGAGTTGCGCGCCGAGTCGGAGGCCGTCGCCAAGACCCAGTTGCGGCGGCAGGGCATCAATGTCGCCAAGATCC
GCCGGCGGCGCAGCGGTTTCGGCAAGAAGATCACCGAAAAGGACATCACGCTGTTCACCCGCCAATTGTCGACGATGATG
CGCGCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGCGGCCAAGGGCCACAGCAATCCGGCGGTGACGCGGATGCTGCT
GGAGGTGCGGGCGGATGTCGAAACCGGCCTGTCGCTGGCCGAGGCCTTCCGCAAGCGCCCGCTGTATTTCGACAAGCTGT
TCTGCAACATCATCGCGGCCGGCGAGGCGGGCGGCGTGCTGGATACCTTGCTGGACAAGCTGGCCACCTATAAGGAAAAG
GTGATGGCCATCAAGTCCAAGATCAAGTCGGCGATGATCTATCCGTCGGCCATCGTCGGCACCGCCTTCATCATCACTGC
GGTGATCATGATTTACGTGATCCCGGCGTTCAAGGACCTGTTCTCCAGCTTCGGCGCCAATCTGCCGGCGCCGACGCTGT
TCGTGATCTGGCTGTCGGACCAGTTCGTCCATTTCTGGTGGCTGATCTTCGGCACGCTGTTCGGCGCGATATTCGCCTTT
TTCTACGCGTTCAAGCGCACGCCCAAGATGCAGGAGCAGATGGACCGCATCCTGCTGCGCTTGCCGGTGATCGGCGACAT
CATACGCAAGGCCACCATCGCGCGCTGGGCGCGCACCTTGTCCACGCTGTTTTCCGCCGGCGTCCCGCTGGTGGAGGCGC
TGGACTCGGTCGGCGGGGCGGCCGGCAACCAGGTTTACGCCGAGGCGACGCGGCGCATCCAGGCCGATGTCAGCACCGGT
TCCAGCCTCAATTACTCGATGCAGCGCACCGACCTGTTCCCTAACATGGTGCTGCAGATGACTTCGATAGGCGAAGAGTC
CGGCTCGCTCGACCAGATGCTGGACAAGGTGGCCGATTTTTACGAGGAAGAAGTGGATAATGCGGTGGCCGCGCTGTCCA
GCCTGCTGGAGCCGGCGATCATGGTGATTCTGGGGATATTGATAGGCGGGTTGGTGATCGCGATGTACATGCCGATTTTC
AAGATGGGCCAGGTGGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.713

99.263

0.533
  pilC Pseudomonas stutzeri DSM 10701

53.218

99.263

0.528
  pilG Neisseria gonorrhoeae MS11

53.453

96.069

0.514
  pilG Neisseria meningitidis 44/76-A

53.453

96.069

0.514
  pilC Acinetobacter baylyi ADP1

50.369

100

0.504
  pilC Acinetobacter baumannii D1279779

49.386

100

0.494
  pilC Vibrio campbellii strain DS40M4

37.74

100

0.386
  pilC Vibrio cholerae strain A1552

36.935

97.789

0.361
  pilC Thermus thermophilus HB27

36.842

98.034

0.361