Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HB761_RS10510 Genome accession   NZ_CP050467
Coordinates   2223041..2224264 (-) Length   407 a.a.
NCBI ID   WP_255933885.1    Uniprot ID   A0AAE9SPB5
Organism   Vibrio campbellii strain LJC014     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218041..2229264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS10470 (HB761_10460) rpsP 2218131..2218379 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  HB761_RS10475 (HB761_10465) rimM 2218407..2218955 (+) 549 WP_005534055.1 ribosome maturation factor RimM -
  HB761_RS10480 (HB761_10470) trmD 2218983..2219726 (+) 744 WP_255933858.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HB761_RS10485 (HB761_10475) rplS 2219768..2220121 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  HB761_RS10490 (HB761_10480) yacG 2220459..2220659 (-) 201 WP_012128882.1 DNA gyrase inhibitor YacG -
  HB761_RS10495 (HB761_10485) zapD 2220716..2221456 (-) 741 WP_005534051.1 cell division protein ZapD -
  HB761_RS10500 (HB761_10490) coaE 2221484..2222098 (-) 615 WP_255899274.1 dephospho-CoA kinase -
  HB761_RS10505 (HB761_10495) pilD 2222099..2222968 (-) 870 WP_255899277.1 A24 family peptidase Machinery gene
  HB761_RS10510 (HB761_10500) pilC 2223041..2224264 (-) 1224 WP_255933885.1 type II secretion system F family protein Machinery gene
  HB761_RS10515 (HB761_10505) pilB 2224299..2225984 (-) 1686 WP_255933887.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HB761_RS10520 (HB761_10510) - 2225984..2226445 (-) 462 WP_255933889.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HB761_RS10525 (HB761_10515) nadC 2226710..2227597 (-) 888 WP_255933891.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HB761_RS10530 (HB761_10520) ampD 2227690..2228241 (+) 552 WP_255933893.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44959.18 Da        Isoelectric Point: 10.3628

>NTDB_id=433070 HB761_RS10510 WP_255933885.1 2223041..2224264(-) (pilC) [Vibrio campbellii strain LJC014]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEVEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSYRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=433070 HB761_RS10510 WP_255933885.1 2223041..2224264(-) (pilC) [Vibrio campbellii strain LJC014]
ATGAAAACCATCGCTCCACAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAGTCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACTATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAGTCGATTCTGAT
GAGTGTCACAAGAGCGGTAGAAGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAACAGTCCGGAAACCTATCTCAAGTCTTTGAGCGTCTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACTCAAAACTGGGGCCCTTTTATTGGATTGAGTTTTGTGAGCCTGCTTATTTCCGGC
AAAATTATGTCGCAGCGATCCGATTCATATCGCCTTTTAGCTGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCAGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTAACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGCCGCCTAGATGATATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAGGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGCGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.017

100

0.99
  pilC Vibrio cholerae strain A1552

73.75

98.28

0.725
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396
  pilG Neisseria gonorrhoeae MS11

39.066

100

0.391
  pilC Legionella pneumophila strain ERS1305867

39.109

99.263

0.388
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383