Detailed information NTG0433069

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HB761_RS10505
• Genome accession: NZ_CP050467
• Coordinates: 2222099..2222968 (-)
• Length: 289 a.a.
• NCBI ID: WP_255899277.1
• Uniprot ID: A0AAE9SJX1
• Organism: Vibrio campbellii strain LJC014
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2217099..2227968

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB761_RS10470 (HB761_10460)	rpsP	2218131..2218379 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
HB761_RS10475 (HB761_10465)	rimM	2218407..2218955 (+)	549	WP_005534055.1	ribosome maturation factor RimM	-
HB761_RS10480 (HB761_10470)	trmD	2218983..2219726 (+)	744	WP_255933858.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
HB761_RS10485 (HB761_10475)	rplS	2219768..2220121 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
HB761_RS10490 (HB761_10480)	yacG	2220459..2220659 (-)	201	WP_012128882.1	DNA gyrase inhibitor YacG	-
HB761_RS10495 (HB761_10485)	zapD	2220716..2221456 (-)	741	WP_005534051.1	cell division protein ZapD	-
HB761_RS10500 (HB761_10490)	coaE	2221484..2222098 (-)	615	WP_255899274.1	dephospho-CoA kinase	-
HB761_RS10505 (HB761_10495)	pilD	2222099..2222968 (-)	870	WP_255899277.1	A24 family peptidase	Machinery gene
HB761_RS10510 (HB761_10500)	pilC	2223041..2224264 (-)	1224	WP_255933885.1	type II secretion system F family protein	Machinery gene
HB761_RS10515 (HB761_10505)	pilB	2224299..2225984 (-)	1686	WP_255933887.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HB761_RS10520 (HB761_10510)	-	2225984..2226445 (-)	462	WP_255933889.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HB761_RS10525 (HB761_10515)	nadC	2226710..2227597 (-)	888	WP_255933891.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32514.82 Da
• Isoelectric Point: 7.8754

>NTDB_id=433069 HB761_RS10505 WP_255899277.1 2222099..2222968(-) (pilD) [Vibrio campbellii strain LJC014]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPRIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCPQCGTPIRIR
DNIPVISWLLLKGKCHKCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=433069 HB761_RS10505 WP_255899277.1 2222099..2222968(-) (pilD) [Vibrio campbellii strain LJC014]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTAGTTATCTACCGTTTACCCAGGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCCGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAAATGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACCCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATTATTTTGCTCTCTTCGGTGGTTGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.578	100	0.976
pilD	Vibrio cholerae strain A1552	75.694	99.654	0.754
pilD	Acinetobacter nosocomialis M2	53.137	93.772	0.498
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443