Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DSUI_RS06420 Genome accession   NC_016616
Coordinates   1377252..1378496 (-) Length   414 a.a.
NCBI ID   WP_014236420.1    Uniprot ID   A0A5H2YT80
Organism   Azospira oryzae PS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1372252..1383496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSUI_RS06385 (Dsui_1312) nudB 1372252..1372719 (-) 468 WP_014236413.1 dihydroneopterin triphosphate diphosphatase -
  DSUI_RS17560 (Dsui_1313) - 1372716..1373162 (-) 447 WP_014236414.1 barstar family protein -
  DSUI_RS06395 (Dsui_1314) - 1373166..1373558 (-) 393 WP_014236415.1 ribonuclease domain-containing protein -
  DSUI_RS06400 (Dsui_1315) aspS 1373574..1375373 (-) 1800 WP_014236416.1 aspartate--tRNA ligase -
  DSUI_RS06405 (Dsui_1316) - 1375404..1376045 (-) 642 WP_014236417.1 DUF502 domain-containing protein -
  DSUI_RS06410 (Dsui_1317) - 1376024..1376296 (-) 273 WP_014236418.1 FmdB family zinc ribbon protein -
  DSUI_RS06415 (Dsui_1318) pilD 1376395..1377249 (-) 855 WP_014236419.1 prepilin peptidase Machinery gene
  DSUI_RS06420 (Dsui_1319) pilC 1377252..1378496 (-) 1245 WP_014236420.1 type II secretion system F family protein Machinery gene
  DSUI_RS06425 (Dsui_1320) pilB 1378521..1380239 (-) 1719 WP_014236421.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DSUI_RS06430 (Dsui_1321) - 1380515..1381354 (-) 840 WP_014236422.1 cytochrome C assembly family protein -
  DSUI_RS06435 (Dsui_1322) ffh 1381400..1382755 (+) 1356 WP_014236423.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45010.15 Da        Isoelectric Point: 9.8402

>NTDB_id=43132 DSUI_RS06420 WP_014236420.1 1377252..1378496(-) (pilC) [Azospira oryzae PS]
MATAGKNTQNTKRADPSIKEFVFVWEGKDKTGKIIRGELRATSETVVQATLRRQGVLVTKVSKQRFKSGGKITDKDITLF
TRQLATMMKSGVPLLQAFDIVGKGHSNPAVGKLLLDIKADVETGSALNQAFRKYPLYFDSLFCNLIGAGEQAGILDTLLD
RLAIYKEKILAVKSKIKSALFYPIAVIVVAFCITAVIMIFVIPAFKEVFKSFGADLPAPTLVVIAISDFFVAYWYLIFGI
LGGGIYSFLESWKRSEAVQIAMDKALLRMPIFGPLIRKSVIARWTRTLATMFAAGVPLVEALDSVGGASGNHVYKMATRQ
IQSEVSTGTSLTNSMQNVNLFPNMVIQMVAIGEESGALDSMLSKVADFFEAEVDDSVAALSSLMEPIIMVILGVLIGGMV
VAMYLPIFKMGSVV

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=43132 DSUI_RS06420 WP_014236420.1 1377252..1378496(-) (pilC) [Azospira oryzae PS]
ATGGCCACTGCCGGCAAAAACACACAAAACACCAAGCGTGCCGACCCAAGCATCAAGGAGTTCGTCTTTGTTTGGGAAGG
CAAGGACAAGACCGGGAAAATCATCCGGGGGGAATTGCGTGCCACCAGCGAAACGGTGGTCCAGGCAACCCTGCGGCGCC
AAGGCGTGCTGGTTACCAAGGTATCCAAGCAGCGTTTCAAGAGTGGCGGCAAGATCACCGACAAGGACATCACCCTGTTC
ACCCGGCAGCTGGCCACCATGATGAAATCTGGGGTGCCGCTTCTCCAGGCCTTCGACATCGTTGGCAAAGGCCACTCAAA
CCCCGCTGTCGGGAAACTGCTGCTGGATATCAAGGCTGATGTCGAAACGGGTAGCGCTCTGAACCAAGCTTTCCGCAAGT
ACCCACTTTACTTCGACAGCCTGTTCTGCAACTTGATCGGCGCCGGCGAGCAGGCCGGCATCCTCGATACACTCCTTGAT
CGACTCGCCATCTACAAGGAAAAAATCCTAGCCGTCAAAAGCAAGATCAAGTCAGCCCTGTTCTATCCAATTGCCGTGAT
TGTCGTAGCTTTTTGCATTACGGCTGTGATCATGATTTTTGTAATTCCTGCGTTCAAAGAGGTTTTCAAATCGTTTGGCG
CGGACCTTCCTGCCCCGACACTGGTCGTAATAGCGATTTCTGACTTCTTCGTTGCCTATTGGTATTTGATCTTCGGCATA
TTGGGAGGAGGTATCTATTCCTTCCTGGAGTCGTGGAAGCGCTCCGAGGCCGTTCAGATTGCCATGGACAAGGCATTGCT
GAGGATGCCGATTTTCGGCCCCCTCATACGGAAATCGGTTATCGCCAGATGGACGAGAACCCTGGCAACCATGTTTGCCG
CCGGCGTTCCTCTGGTTGAGGCATTGGACTCAGTGGGCGGAGCCTCAGGCAACCACGTTTACAAAATGGCAACGCGTCAG
ATCCAAAGCGAAGTCAGTACCGGCACCAGCCTGACCAACTCAATGCAGAATGTGAACCTGTTCCCCAACATGGTGATCCA
GATGGTTGCCATCGGTGAGGAATCTGGAGCCCTCGACTCAATGCTGTCCAAGGTTGCGGACTTCTTTGAAGCCGAAGTGG
ACGATTCTGTTGCGGCCCTCTCCAGCCTGATGGAGCCAATCATCATGGTCATATTGGGGGTTCTCATCGGCGGCATGGTG
GTGGCGATGTACCTGCCGATCTTCAAAATGGGCTCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(80-203)

Type II secretion system (T2SS), protein F (T2SSF)

(284-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5H2YT80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.808

95.652

0.534
  pilC Pseudomonas stutzeri DSM 10701

53.713

97.585

0.524
  pilC Acinetobacter baumannii D1279779

53.383

96.377

0.514
  pilC Acinetobacter baylyi ADP1

52.01

96.135

0.5
  pilG Neisseria gonorrhoeae MS11

51.889

95.894

0.498
  pilG Neisseria meningitidis 44/76-A

51.637

95.894

0.495
  pilC Vibrio campbellii strain DS40M4

38.725

98.551

0.382
  pilC Vibrio cholerae strain A1552

38.636

95.652

0.37

Multiple sequence alignment