Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ILP78_RS05525 Genome accession   NZ_CP062465
Coordinates   1086224..1086964 (+) Length   246 a.a.
NCBI ID   WP_000216873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA - AMRF 6     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081224..1091964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILP78_RS05500 (ILP78_05500) yhaM 1081642..1082583 (+) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -
  ILP78_RS05505 (ILP78_05505) - 1082704..1083666 (-) 963 WP_000782121.1 foldase protein PrsA -
  ILP78_RS05510 (ILP78_05510) - 1083871..1084428 (-) 558 WP_000477954.1 DUF3267 domain-containing protein -
  ILP78_RS05515 (ILP78_05515) - 1085161..1085526 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  ILP78_RS05520 (ILP78_05520) - 1085668..1086090 (-) 423 WP_000004981.1 HIT family protein -
  ILP78_RS05525 (ILP78_05525) pptA 1086224..1086964 (+) 741 WP_000216873.1 ABC transporter ATP-binding protein EcsA Regulator
  ILP78_RS05530 (ILP78_05530) ecsB 1086957..1088180 (+) 1224 WP_000551840.1 ABC transporter permease EcsB -
  ILP78_RS05535 (ILP78_05535) traP 1088304..1088807 (-) 504 WP_000737976.1 signal transduction protein TRAP -
  ILP78_RS05540 (ILP78_05540) - 1088970..1089080 (+) 111 WP_001790154.1 hypothetical protein -
  ILP78_RS05545 (ILP78_05545) hemE 1089070..1090107 (+) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  ILP78_RS05550 (ILP78_05550) hemH 1090165..1091088 (+) 924 WP_000162881.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27701.09 Da        Isoelectric Point: 4.7455

>NTDB_id=431027 ILP78_RS05525 WP_000216873.1 1086224..1086964(+) (pptA) [Staphylococcus aureus strain MRSA - AMRF 6]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHKQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=431027 ILP78_RS05525 WP_000216873.1 1086224..1086964(+) (pptA) [Staphylococcus aureus strain MRSA - AMRF 6]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAAACAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545