Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HB753_RS00185 Genome accession   NZ_CP050270
Coordinates   35121..35516 (+) Length   131 a.a.
NCBI ID   WP_019804915.1    Uniprot ID   -
Organism   Streptococcus mutans strain S4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 30121..40516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB753_RS00145 (HB753_00145) - 30296..30958 (+) 663 WP_002263446.1 type II CAAX endopeptidase family protein -
  HB753_RS00150 (HB753_00150) proC 31043..31813 (-) 771 WP_002263447.1 pyrroline-5-carboxylate reductase -
  HB753_RS00155 (HB753_00155) pepA 31869..32857 (-) 989 Protein_25 glutamyl aminopeptidase -
  HB753_RS00160 (HB753_00160) - 32917..33225 (+) 309 WP_019317545.1 DUF4651 domain-containing protein -
  HB753_RS00165 (HB753_00165) - 33203..33532 (+) 330 WP_002264003.1 thioredoxin family protein -
  HB753_RS00170 (HB753_00170) ytpR 33529..34155 (+) 627 WP_019804917.1 YtpR family tRNA-binding protein -
  HB753_RS00175 (HB753_00175) - 34244..34675 (+) 432 WP_018110218.1 MarR family winged helix-turn-helix transcriptional regulator -
  HB753_RS00180 (HB753_00180) - 34675..35034 (+) 360 WP_019804916.1 rhodanese-like domain-containing protein -
  HB753_RS00185 (HB753_00185) ssbA 35121..35516 (+) 396 WP_019804915.1 single-stranded DNA-binding protein Machinery gene
  HB753_RS00190 (HB753_00190) - 35935..36897 (+) 963 WP_002280593.1 sugar ABC transporter substrate-binding protein -
  HB753_RS00195 (HB753_00195) - 36897..38219 (+) 1323 WP_002263456.1 sensor histidine kinase -
  HB753_RS00200 (HB753_00200) - 38219..38899 (+) 681 WP_002263457.1 response regulator transcription factor -
  HB753_RS00205 (HB753_00205) - 38892..40199 (+) 1308 WP_002267844.1 extracellular solute-binding protein -
  HB753_RS00210 (HB753_00210) - 40265..40468 (+) 204 Protein_36 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14855.97 Da        Isoelectric Point: 7.2054

>NTDB_id=431027 HB753_RS00185 WP_019804915.1 35121..35516(+) (ssbA) [Streptococcus mutans strain S4]
MYNKVILIGRLVATPEMVKTPKDKSVTRVTLAVNRRFKSQDGEKQADFVNVVLWGRLAETIASYGSKGSLISLDGELRTR
KYEKDGVTHFVTEVLGHSFQLLESRAQRAMRENNSEKDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=431027 HB753_RS00185 WP_019804915.1 35121..35516(+) (ssbA) [Streptococcus mutans strain S4]
ATGTATAATAAAGTTATTTTGATTGGTCGTTTAGTTGCGACACCTGAAATGGTAAAAACACCAAAGGATAAGTCTGTTAC
GCGCGTGACACTGGCTGTCAATCGGCGATTTAAAAGTCAAGATGGGGAAAAGCAGGCTGATTTTGTCAATGTTGTTCTTT
GGGGCAGATTGGCAGAAACAATAGCTTCCTATGGTAGTAAGGGAAGTCTCATCTCTCTTGATGGAGAATTGCGTACCCGT
AAATATGAAAAAGATGGCGTCACTCATTTTGTGACTGAAGTTTTGGGACACTCCTTTCAATTACTGGAAAGTCGTGCTCA
ACGTGCTATGCGTGAAAATAATTCTGAAAAAGATTTGGCCGATTTGGTTCTGGAAGAGGAGGAACTCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

99.237

100

0.992
  ssbB Streptococcus sobrinus strain NIDR 6715-7

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae TIGR4

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae Rx1

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae D39

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae R6

74.809

100

0.748
  ssbB/cilA Streptococcus mitis SK321

74.809

100

0.748
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

58.036

85.496

0.496
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405