Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HBA18_RS02335 Genome accession   NZ_CP050266
Coordinates   462105..463319 (-) Length   404 a.a.
NCBI ID   WP_167313971.1    Uniprot ID   -
Organism   Salinivibrio costicola strain M318     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457105..468319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA18_RS02310 (HBA18_02310) mutT 459156..459551 (+) 396 WP_069586607.1 8-oxo-dGTP diphosphatase MutT -
  HBA18_RS02315 (HBA18_02315) yacG 459582..459788 (-) 207 WP_069586608.1 DNA gyrase inhibitor YacG -
  HBA18_RS02320 (HBA18_02320) zapD 459793..460533 (-) 741 WP_167313968.1 cell division protein ZapD -
  HBA18_RS02325 (HBA18_02325) coaE 460557..461171 (-) 615 WP_167313969.1 dephospho-CoA kinase -
  HBA18_RS02330 (HBA18_02330) pilD 461171..462040 (-) 870 WP_167313970.1 A24 family peptidase Machinery gene
  HBA18_RS02335 (HBA18_02335) pilC 462105..463319 (-) 1215 WP_167313971.1 type II secretion system F family protein Machinery gene
  HBA18_RS02340 (HBA18_02340) pilB 463329..465011 (-) 1683 WP_167313972.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HBA18_RS02345 (HBA18_02345) - 465082..465516 (-) 435 WP_167313973.1 pilin -
  HBA18_RS02350 (HBA18_02350) nadC 465765..466673 (-) 909 WP_167313974.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HBA18_RS02355 (HBA18_02355) - 466836..467828 (+) 993 WP_167313975.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44822.51 Da        Isoelectric Point: 9.9585

>NTDB_id=430991 HBA18_RS02335 WP_167313971.1 462105..463319(-) (pilC) [Salinivibrio costicola strain M318]
MAKPTLFLFHWRQAAVGGDKKGQVFAYTEQDARQQLASQSILPTRIIRRRLSSFQQRRHKAKAADITQFSRDLTTLLESG
IPIVQALNLIALNQVKAEMRLLVRHIRQQLEAGTSLSDALAQASPLFDRFYCDLVATGEQTGQLPQVFARLTLYREKQAQ
LRSKVIKAMIYPSIVISVALGVSAYLLVFVIPKFKHIFDSFGAELPWLTQKVLALSDIVSQHALTIALMVAGLAAAHQLL
QRKNATYHYYYDRWLLRLPVIGEVVSKACIAKFSRTLATTFSAGIPLLSGLQAATKSMTNAYYVHALNAVYQHTATGIPL
HQALRDSDSFPVMVTQMVMIGEESGSLDNMLNRIAQIYEAEVDNTVDNLGKIIEPLLILVLGLLIGGLVVAMYLPIFNLM
SVLG

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=430991 HBA18_RS02335 WP_167313971.1 462105..463319(-) (pilC) [Salinivibrio costicola strain M318]
ATGGCCAAACCCACGCTGTTTCTCTTTCATTGGCGCCAAGCCGCTGTAGGCGGCGACAAAAAAGGCCAGGTGTTCGCCTA
TACCGAGCAGGATGCTCGCCAACAGCTGGCGAGCCAATCGATCTTGCCCACACGCATCATTCGCCGTCGACTATCGAGCT
TTCAGCAGCGCCGTCACAAAGCCAAAGCGGCGGATATCACTCAGTTTTCCCGCGATCTCACCACCCTGCTAGAGTCTGGG
ATCCCTATCGTACAGGCCCTCAACCTCATCGCGCTCAATCAGGTCAAAGCCGAGATGCGCTTGCTGGTGCGTCATATTCG
CCAGCAACTCGAAGCGGGCACCAGTTTAAGCGATGCGTTGGCGCAAGCGAGTCCCTTGTTTGATCGCTTCTACTGCGATC
TGGTCGCAACAGGTGAGCAAACCGGGCAGTTGCCGCAGGTCTTTGCCCGTTTAACCTTGTATCGTGAAAAGCAGGCGCAG
CTTCGCAGTAAAGTGATTAAAGCCATGATCTATCCCAGCATAGTGATCAGCGTGGCCTTGGGAGTGAGTGCCTATCTGCT
GGTATTCGTGATCCCGAAGTTTAAACATATTTTTGACTCCTTCGGCGCCGAGCTACCTTGGCTGACCCAAAAAGTGCTCG
CCTTATCCGACATCGTGAGCCAACACGCATTGACCATCGCACTGATGGTGGCGGGCCTTGCCGCTGCCCACCAATTGCTA
CAGCGTAAAAACGCGACTTACCACTATTACTATGACCGCTGGCTACTCCGACTGCCCGTCATTGGTGAAGTGGTGAGTAA
AGCCTGCATTGCCAAATTTTCTCGTACCCTCGCCACCACCTTTAGTGCTGGTATTCCGTTACTTTCTGGCTTACAAGCGG
CAACAAAATCCATGACCAACGCTTATTATGTTCACGCGCTTAATGCAGTGTATCAGCACACTGCAACAGGTATTCCACTC
CACCAAGCACTGCGTGACAGCGACAGCTTCCCTGTGATGGTGACCCAAATGGTGATGATTGGCGAAGAGTCGGGCTCACT
CGATAATATGCTCAACCGCATCGCGCAAATCTATGAAGCCGAAGTCGATAACACCGTGGACAACCTCGGTAAAATTATCG
AGCCCCTGTTAATTTTAGTGCTGGGGCTATTGATTGGCGGCTTGGTGGTGGCCATGTATTTACCGATTTTCAATCTGATG
TCCGTTCTTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

51.134

98.267

0.502
  pilC Vibrio campbellii strain DS40M4

50

99.505

0.498
  pilG Neisseria meningitidis 44/76-A

40.547

99.505

0.403
  pilG Neisseria gonorrhoeae MS11

40.299

99.505

0.401
  pilC Acinetobacter baylyi ADP1

39.844

95.05

0.379
  pilC Acinetobacter baumannii D1279779

39.74

95.297

0.379
  pilC Legionella pneumophila strain ERS1305867

38.095

98.762

0.376
  pilC Pseudomonas stutzeri DSM 10701

37.28

98.267

0.366