Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HBA18_RS02330 Genome accession   NZ_CP050266
Coordinates   461171..462040 (-) Length   289 a.a.
NCBI ID   WP_167313970.1    Uniprot ID   -
Organism   Salinivibrio costicola strain M318     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 456171..467040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA18_RS02305 (HBA18_02305) secA 456299..459022 (+) 2724 WP_167313967.1 preprotein translocase subunit SecA -
  HBA18_RS02310 (HBA18_02310) mutT 459156..459551 (+) 396 WP_069586607.1 8-oxo-dGTP diphosphatase MutT -
  HBA18_RS02315 (HBA18_02315) yacG 459582..459788 (-) 207 WP_069586608.1 DNA gyrase inhibitor YacG -
  HBA18_RS02320 (HBA18_02320) zapD 459793..460533 (-) 741 WP_167313968.1 cell division protein ZapD -
  HBA18_RS02325 (HBA18_02325) coaE 460557..461171 (-) 615 WP_167313969.1 dephospho-CoA kinase -
  HBA18_RS02330 (HBA18_02330) pilD 461171..462040 (-) 870 WP_167313970.1 A24 family peptidase Machinery gene
  HBA18_RS02335 (HBA18_02335) pilC 462105..463319 (-) 1215 WP_167313971.1 type II secretion system F family protein Machinery gene
  HBA18_RS02340 (HBA18_02340) pilB 463329..465011 (-) 1683 WP_167313972.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HBA18_RS02345 (HBA18_02345) - 465082..465516 (-) 435 WP_167313973.1 pilin -
  HBA18_RS02350 (HBA18_02350) nadC 465765..466673 (-) 909 WP_167313974.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31921.19 Da        Isoelectric Point: 7.8458

>NTDB_id=430990 HBA18_RS02330 WP_167313970.1 461171..462040(-) (pilD) [Salinivibrio costicola strain M318]
MLIFSSPLFIVLAGLFGLIIGSFLNVVIARLPVMMARRWRQECLATFPDANIEAPDGQRFDLCLPASHCPACEQTIRWYD
NIPLLSWLALKGRCRHCQHPISKRYPLVELTSAILCMLPAWLFTSPTWAIAVMAASLVLLALTLIDWETLLLPDQLTLPL
MWSGIGLALIGISPVTLSESVIGAMVGYVSLWSLFWAFKLTTGKEGMGYGDFKLFAALGAWLGWQVLPLLILLASLSGAV
IGAIVLRRQQQGLQQPFAFGPFIAIAGWICLLWGDGLLHWYLSQLLGVR

Nucleotide


Download         Length: 870 bp        

>NTDB_id=430990 HBA18_RS02330 WP_167313970.1 461171..462040(-) (pilD) [Salinivibrio costicola strain M318]
ATGTTGATATTCTCATCGCCGTTATTCATCGTTCTTGCCGGCCTATTCGGCCTGATTATCGGTAGCTTTTTAAATGTGGT
CATCGCACGTTTGCCGGTCATGATGGCGCGTCGTTGGCGCCAAGAATGCTTAGCCACCTTTCCTGATGCAAACATTGAGG
CCCCCGATGGGCAGCGTTTTGATTTGTGCCTTCCCGCGTCTCACTGTCCGGCCTGTGAGCAAACCATTCGCTGGTATGAC
AATATTCCGCTGCTCAGTTGGCTGGCTTTAAAAGGCCGCTGCCGCCATTGCCAACATCCCATCAGTAAACGCTATCCACT
GGTAGAGCTGACCAGCGCGATACTTTGCATGCTCCCCGCATGGCTTTTCACCTCCCCGACATGGGCCATCGCGGTGATGG
CGGCTAGTTTAGTGTTGTTAGCCTTAACCTTGATTGATTGGGAAACCCTGCTGCTGCCCGATCAACTCACCTTACCCTTG
ATGTGGTCCGGCATCGGCCTTGCGCTGATCGGCATCAGCCCTGTCACCCTCAGTGAGAGTGTCATTGGCGCCATGGTCGG
TTATGTCAGCCTTTGGAGCCTCTTTTGGGCCTTTAAGCTCACCACCGGCAAAGAAGGCATGGGCTATGGCGACTTTAAGC
TCTTTGCCGCCTTGGGGGCGTGGCTGGGATGGCAAGTACTGCCGCTCTTGATCCTGCTGGCCTCATTAAGTGGCGCTGTG
ATTGGCGCGATCGTACTCCGCCGTCAGCAGCAAGGACTACAGCAACCTTTCGCCTTTGGTCCTTTTATTGCGATCGCCGG
CTGGATCTGCCTCCTGTGGGGTGATGGCCTGTTACACTGGTACCTTTCACAACTATTGGGAGTGCGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-242)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.357

96.886

0.585
  pilD Vibrio campbellii strain DS40M4

56.584

97.232

0.55
  pilD Acinetobacter baumannii D1279779

49.821

96.54

0.481
  pilD Acinetobacter nosocomialis M2

49.821

96.54

0.481
  pilD Neisseria gonorrhoeae MS11

43.706

98.962

0.433