Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G9Q37_RS21045 Genome accession   NZ_CP049989
Coordinates   4412632..4413849 (-) Length   405 a.a.
NCBI ID   WP_166230496.1    Uniprot ID   -
Organism   Hydrogenophaga crocea strain BA0156     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4407632..4418849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9Q37_RS21015 (G9Q37_21015) - 4408837..4409715 (+) 879 WP_166230486.1 ATP-binding protein -
  G9Q37_RS21020 (G9Q37_21020) - 4409712..4410167 (+) 456 WP_166230488.1 NUDIX domain-containing protein -
  G9Q37_RS21025 (G9Q37_21025) - 4410178..4410372 (-) 195 WP_166230490.1 DNA gyrase inhibitor YacG -
  G9Q37_RS21030 (G9Q37_21030) zapD 4410377..4411132 (-) 756 WP_166230492.1 cell division protein ZapD -
  G9Q37_RS21035 (G9Q37_21035) coaE 4411176..4411781 (-) 606 WP_166230494.1 dephospho-CoA kinase -
  G9Q37_RS21040 (G9Q37_21040) pilD 4411778..4412623 (-) 846 WP_166231555.1 prepilin peptidase Machinery gene
  G9Q37_RS21045 (G9Q37_21045) pilC 4412632..4413849 (-) 1218 WP_166230496.1 type II secretion system F family protein Machinery gene
  G9Q37_RS21050 (G9Q37_21050) pilB 4413885..4415618 (-) 1734 WP_166230498.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G9Q37_RS21060 (G9Q37_21060) - 4415892..4416821 (-) 930 WP_166230500.1 polyprenyl synthetase family protein -
  G9Q37_RS21065 (G9Q37_21065) rplU 4417083..4417394 (+) 312 WP_166230502.1 50S ribosomal protein L21 -
  G9Q37_RS21070 (G9Q37_21070) rpmA 4417407..4417664 (+) 258 WP_166230504.1 50S ribosomal protein L27 -
  G9Q37_RS21075 (G9Q37_21075) cgtA 4417745..4418815 (+) 1071 WP_166230506.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44204.85 Da        Isoelectric Point: 9.5102

>NTDB_id=429189 G9Q37_RS21045 WP_166230496.1 4412632..4413849(-) (pilC) [Hydrogenophaga crocea strain BA0156]
MATVASKSVKDFVFEWEGKDRNGKPVRGETRAQGENQVTASLRRQGIVPVKIKKRRTSSGKRIKPKDIAIFTRQFATMMK
AGVPLLQAFDIVGRGNPNPNVTRLLGDIRADVETGTSLSSAFRKYPMYFDSLYCNLVEAGEAAGILEDLLDRLATYMEKT
EALKSKIKSALMYPTAVIIVAFVVVAVIMIFVIPSFKQVFSSFGADLPGPTLVVIAMSEFFVAYWWLIFGALGGGAYFFM
QAWKRNERVQRFMDRLLLKLPIFGPLIEKSVVARWTRTLATMFGAGVPLVEALDSVGGASGNSVYAIATEKIQQDVSTGI
SLTTAMTNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=429189 G9Q37_RS21045 WP_166230496.1 4412632..4413849(-) (pilC) [Hydrogenophaga crocea strain BA0156]
ATGGCCACCGTTGCAAGCAAGAGCGTCAAGGACTTCGTGTTCGAGTGGGAGGGCAAGGACCGCAACGGCAAGCCGGTGCG
GGGTGAGACGCGCGCGCAGGGGGAGAACCAGGTCACCGCCTCGCTGCGCCGCCAGGGCATCGTGCCGGTGAAGATCAAGA
AGCGCCGCACCTCGTCAGGCAAACGCATCAAGCCCAAGGACATCGCGATCTTCACGCGCCAGTTCGCGACCATGATGAAG
GCGGGCGTGCCCCTGCTGCAGGCGTTCGACATCGTGGGCCGGGGCAACCCCAATCCCAACGTCACCCGGCTGCTCGGCGA
CATCCGCGCCGACGTCGAAACCGGCACCTCGCTGAGTTCGGCGTTCCGCAAGTACCCGATGTACTTCGACAGCCTCTACT
GCAACCTGGTGGAGGCCGGTGAAGCCGCCGGTATCCTGGAAGACCTGCTCGACCGCCTCGCCACCTACATGGAGAAGACC
GAGGCGCTGAAGTCCAAGATCAAGTCGGCCCTGATGTACCCCACGGCCGTGATCATCGTGGCCTTCGTGGTGGTGGCGGT
GATCATGATCTTCGTGATCCCGTCCTTCAAGCAGGTCTTCTCGAGCTTCGGCGCCGACCTGCCTGGACCGACTTTGGTCG
TGATCGCCATGAGCGAGTTCTTCGTCGCTTACTGGTGGCTGATCTTCGGCGCGCTGGGCGGCGGCGCCTACTTCTTCATG
CAGGCCTGGAAACGCAATGAACGGGTCCAGCGCTTCATGGACCGGCTGCTGCTCAAGCTGCCCATCTTCGGCCCGCTGAT
CGAAAAATCGGTGGTGGCGCGCTGGACGCGCACGCTCGCCACCATGTTCGGCGCCGGCGTTCCGCTGGTCGAGGCGCTGG
ATTCCGTGGGCGGCGCGTCGGGCAACTCCGTCTACGCCATCGCCACCGAGAAGATCCAGCAGGATGTGTCGACCGGCATC
AGCCTGACCACGGCCATGACGAACGCCAACATCTTTCCTTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAGTCGGG
CTCGATCGACCACATGCTGGGCAAGGCGGCCGACTTCTATGAAGCGGAAGTCGACGACATGGTGGCCGGCATCTCCAGCC
TCATGGAGCCCATCATCATCGTGGTGCTGGGCACCGTGATCGGTGGCATCGTGGTGTCCATGTACCTGCCGATCTTCAAA
CTCGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.568

100

0.546
  pilG Neisseria gonorrhoeae MS11

52

98.765

0.514
  pilG Neisseria meningitidis 44/76-A

51.5

98.765

0.509
  pilC Legionella pneumophila strain ERS1305867

50

98.272

0.491
  pilC Acinetobacter baylyi ADP1

50

98.272

0.491
  pilC Acinetobacter baumannii D1279779

48.866

98.025

0.479
  pilC Vibrio cholerae strain A1552

42.105

98.519

0.415
  pilC Vibrio campbellii strain DS40M4

39.651

99.012

0.393
  pilC Thermus thermophilus HB27

37.923

100

0.388