Detailed information NTG0429188

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G9Q37_RS21040
• Genome accession: NZ_CP049989
• Coordinates: 4411778..4412623 (-)
• Length: 281 a.a.
• NCBI ID: WP_166231555.1
• Uniprot ID: -
• Organism: Hydrogenophaga crocea strain BA0156
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4406778..4417623

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G9Q37_RS21010 (G9Q37_21010)	argJ	4407593..4408840 (+)	1248	WP_166230484.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
G9Q37_RS21015 (G9Q37_21015)	-	4408837..4409715 (+)	879	WP_166230486.1	ATP-binding protein	-
G9Q37_RS21020 (G9Q37_21020)	-	4409712..4410167 (+)	456	WP_166230488.1	NUDIX domain-containing protein	-
G9Q37_RS21025 (G9Q37_21025)	-	4410178..4410372 (-)	195	WP_166230490.1	DNA gyrase inhibitor YacG	-
G9Q37_RS21030 (G9Q37_21030)	zapD	4410377..4411132 (-)	756	WP_166230492.1	cell division protein ZapD	-
G9Q37_RS21035 (G9Q37_21035)	coaE	4411176..4411781 (-)	606	WP_166230494.1	dephospho-CoA kinase	-
G9Q37_RS21040 (G9Q37_21040)	pilD	4411778..4412623 (-)	846	WP_166231555.1	prepilin peptidase	Machinery gene
G9Q37_RS21045 (G9Q37_21045)	pilC	4412632..4413849 (-)	1218	WP_166230496.1	type II secretion system F family protein	Machinery gene
G9Q37_RS21050 (G9Q37_21050)	pilB	4413885..4415618 (-)	1734	WP_166230498.1	type IV-A pilus assembly ATPase PilB	Machinery gene
G9Q37_RS21060 (G9Q37_21060)	-	4415892..4416821 (-)	930	WP_166230500.1	polyprenyl synthetase family protein	-
G9Q37_RS21065 (G9Q37_21065)	rplU	4417083..4417394 (+)	312	WP_166230502.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 29906.41 Da
• Isoelectric Point: 7.3659

>NTDB_id=429188 G9Q37_RS21040 WP_166231555.1 4411778..4412623(-) (pilD) [Hydrogenophaga crocea strain BA0156]
MAAGAPAGALLGLLGLLVGSFLNVVIHRLPRMMERQWARECAELQGHDSEAAEEKAYNLLVPRSACPHCGHTIRWHENIP
VLSYALLRGRCSQCGHGIGIRYPLVELTTGALFAWVGWQWGLGVTALAWCGFAAALLALAGIDWDTTLLPDDITLPLLWA
GLVLSAAGLMSVPLTDAVWGAVAGYLSLWLIYWVFKLLTGKEGMGHGDFKLFAALGAWFGWQALVPIILMASVLGAVVGI
GIKLVGRLREGGYVPFGPFLALGGITAMLFGPRAILAAVGL

Nucleotide

• Length: 846 bp

>NTDB_id=429188 G9Q37_RS21040 WP_166231555.1 4411778..4412623(-) (pilD) [Hydrogenophaga crocea strain BA0156]
ATGGCCGCGGGCGCGCCCGCCGGGGCGTTGCTGGGTTTGCTCGGACTGCTGGTAGGCAGTTTTCTCAACGTGGTGATCCA
CCGCCTGCCCCGGATGATGGAACGGCAGTGGGCGCGCGAGTGCGCCGAACTGCAGGGCCACGACAGCGAGGCAGCCGAAG
AGAAGGCCTACAACCTGCTCGTGCCCCGGTCCGCCTGTCCCCATTGCGGTCACACGATCCGCTGGCACGAAAACATTCCC
GTGCTCAGCTACGCGCTGCTGCGCGGCCGCTGCAGCCAGTGCGGGCACGGCATCGGCATCCGTTATCCGCTGGTCGAACT
CACGACCGGTGCGCTGTTCGCCTGGGTGGGGTGGCAGTGGGGGCTGGGTGTCACGGCGCTGGCCTGGTGCGGTTTCGCCG
CGGCCCTGCTGGCGCTCGCCGGCATCGACTGGGACACCACCCTGCTGCCCGACGACATCACGCTGCCGCTGCTGTGGGCA
GGCCTGGTGCTCTCGGCGGCCGGCCTCATGAGCGTGCCGTTGACCGATGCGGTGTGGGGCGCGGTCGCGGGCTACCTGTC
GCTCTGGCTCATCTACTGGGTCTTCAAGCTGCTCACCGGCAAGGAGGGCATGGGCCATGGCGATTTCAAGCTGTTCGCCG
CCCTGGGGGCCTGGTTCGGCTGGCAGGCCCTGGTGCCCATCATCCTGATGGCCTCGGTGCTGGGTGCCGTCGTTGGCATC
GGCATCAAGCTGGTGGGCCGGCTGCGCGAAGGCGGCTACGTGCCCTTCGGCCCCTTCCTGGCGCTCGGCGGCATCACGGC
CATGCTGTTCGGGCCGCGCGCCATCCTCGCGGCCGTGGGCCTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (132-240)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.632	94.662	0.498
pilD	Vibrio campbellii strain DS40M4	50.382	93.238	0.47
pilD	Neisseria gonorrhoeae MS11	50.775	91.815	0.466
pilD	Acinetobacter baumannii D1279779	43.173	96.441	0.416
pilD	Acinetobacter nosocomialis M2	43.173	96.441	0.416