Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G8A07_RS06200 Genome accession   NZ_CP049919
Coordinates   1324352..1325572 (-) Length   406 a.a.
NCBI ID   WP_195796203.1    Uniprot ID   A0A7S9GHI3
Organism   Roseateles sp. DAIF2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1319352..1330572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8A07_RS06170 (G8A07_06170) pgi 1319501..1321123 (+) 1623 WP_195796199.1 glucose-6-phosphate isomerase -
  G8A07_RS06175 (G8A07_06175) - 1321149..1321766 (+) 618 WP_195796200.1 HAD family hydrolase -
  G8A07_RS06180 (G8A07_06180) - 1321755..1321967 (-) 213 WP_195796201.1 DNA gyrase inhibitor YacG -
  G8A07_RS06185 (G8A07_06185) zapD 1321973..1322728 (-) 756 WP_195797621.1 cell division protein ZapD -
  G8A07_RS06190 (G8A07_06190) coaE 1322811..1323404 (-) 594 WP_249937244.1 dephospho-CoA kinase -
  G8A07_RS06195 (G8A07_06195) - 1323407..1324333 (-) 927 WP_195796202.1 A24 family peptidase -
  G8A07_RS06200 (G8A07_06200) pilC 1324352..1325572 (-) 1221 WP_195796203.1 type II secretion system F family protein Machinery gene
  G8A07_RS06205 (G8A07_06205) pilB 1325609..1327336 (-) 1728 WP_195796204.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G8A07_RS06210 (G8A07_06210) - 1327570..1329957 (+) 2388 WP_195796205.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44318.92 Da        Isoelectric Point: 9.7811

>NTDB_id=428682 G8A07_RS06200 WP_195796203.1 1324352..1325572(-) (pilC) [Roseateles sp. DAIF2]
MATGAIAKNVKDFVFEWEGKDRNGKTVRGELRAGGEAMVSATLRRQGILVSKVKKRRNTGGKAIKQKDIAVFTRQLATMM
RAGVPLLQSFDIVARGSTNPRLTRLLNDIRQDVETGTSLSASFRKHPMYFDALYCNLVEAGEAGGILEALLDRLAIYQEK
TVALKNKIKSALTYPIAVLSVAFIVVAVIMIFVVPAFKDVFQSFGADLPAPTLAVIAMSEFFVSYWWAIFGFIGGGLYFF
IQSWKRSESMQKRMDRLLLKIPVFGDLLYKSAVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVFVEATEKIQRDVSTG
AALTTSMQATAIFPTMVLQMASIGEESGSLDHMLSKAAEFYEDEVDEAVKALSSLMEPFIIVILGTVIGGIVVAMYMPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=428682 G8A07_RS06200 WP_195796203.1 1324352..1325572(-) (pilC) [Roseateles sp. DAIF2]
ATGGCAACAGGCGCAATAGCCAAGAACGTCAAGGACTTTGTCTTCGAATGGGAAGGCAAGGACCGCAATGGCAAGACCGT
GCGCGGCGAGCTCCGCGCGGGCGGCGAGGCCATGGTCAGCGCCACCCTGCGCCGCCAGGGCATCCTGGTCAGCAAGGTCA
AGAAGCGCCGCAACACCGGCGGCAAGGCCATCAAGCAGAAGGACATCGCGGTCTTCACCCGCCAGCTCGCGACGATGATG
CGCGCCGGCGTGCCGCTGCTGCAATCTTTCGACATCGTCGCGCGTGGCAGCACCAACCCGCGCCTGACCCGGCTGCTGAA
CGACATCCGCCAGGACGTCGAGACCGGCACCAGCCTGTCGGCCTCCTTCCGCAAGCATCCGATGTACTTCGACGCGCTGT
ACTGCAATCTGGTTGAAGCCGGCGAAGCGGGCGGCATCCTGGAAGCGCTGCTGGACCGCCTGGCGATTTACCAGGAGAAG
ACGGTCGCGCTCAAGAACAAGATCAAATCCGCCCTGACCTACCCGATCGCGGTGCTATCCGTGGCCTTCATCGTCGTGGC
CGTGATCATGATCTTCGTCGTGCCGGCCTTCAAGGACGTGTTCCAGTCCTTTGGTGCCGACCTGCCGGCACCTACCCTGG
CCGTGATCGCGATGTCGGAATTCTTCGTCAGCTACTGGTGGGCCATCTTCGGTTTCATCGGTGGCGGCCTCTATTTCTTC
ATCCAGTCCTGGAAGCGCTCGGAGTCGATGCAAAAGCGCATGGACCGGTTGCTGCTGAAGATCCCCGTTTTCGGCGACCT
GCTCTACAAGTCCGCGGTCGCGCGCTGGACCCGCACCCTGTCGACGATGTTCGCCGCCGGCGTGCCCTTGGTCGAGGCCC
TGGACTCGGTCGGCGGGGCGTCGGGCAATGCGGTGTTCGTCGAGGCGACCGAGAAGATCCAGCGCGATGTTTCGACCGGC
GCGGCCCTGACCACCTCGATGCAGGCCACCGCCATCTTTCCCACGATGGTGCTGCAGATGGCCTCGATCGGTGAGGAATC
CGGCTCGCTGGACCATATGCTGTCCAAGGCCGCCGAGTTCTACGAGGACGAAGTGGACGAGGCGGTCAAGGCCCTGTCCA
GCCTGATGGAACCCTTCATCATCGTGATCCTCGGTACCGTGATCGGTGGCATCGTCGTCGCGATGTACATGCCGATCTTC
AAGCTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9GHI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.072

99.261

0.567
  pilG Neisseria meningitidis 44/76-A

54

98.522

0.532
  pilG Neisseria gonorrhoeae MS11

54

98.522

0.532
  pilC Legionella pneumophila strain ERS1305867

52.778

97.537

0.515
  pilC Acinetobacter baylyi ADP1

49.497

98.03

0.485
  pilC Acinetobacter baumannii D1279779

49.37

97.783

0.483
  pilC Vibrio cholerae strain A1552

41.439

99.261

0.411
  pilC Vibrio campbellii strain DS40M4

39.268

100

0.397
  pilC Thermus thermophilus HB27

38.366

99.507

0.382