Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G7047_RS17125 Genome accession   NZ_CP049910
Coordinates   3749821..3751038 (+) Length   405 a.a.
NCBI ID   WP_166307976.1    Uniprot ID   A0A6G8CRF7
Organism   Diaphorobacter sp. HDW4A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3744821..3756038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7047_RS17100 (G7047_17105) rpmA 3745670..3745927 (-) 258 WP_166307967.1 50S ribosomal protein L27 -
  G7047_RS17105 (G7047_17110) rplU 3745939..3746250 (-) 312 WP_166307970.1 50S ribosomal protein L21 -
  G7047_RS17110 (G7047_17115) - 3746571..3747500 (+) 930 WP_166312117.1 polyprenyl synthetase family protein -
  G7047_RS17120 (G7047_17125) pilB 3748057..3749793 (+) 1737 WP_166307973.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G7047_RS17125 (G7047_17130) pilC 3749821..3751038 (+) 1218 WP_166307976.1 type II secretion system F family protein Machinery gene
  G7047_RS17130 (G7047_17135) - 3751038..3752006 (+) 969 WP_166307979.1 A24 family peptidase -
  G7047_RS17135 (G7047_17140) coaE 3752014..3752634 (+) 621 WP_166307982.1 dephospho-CoA kinase -
  G7047_RS17140 (G7047_17145) zapD 3752708..3753463 (+) 756 WP_166307985.1 cell division protein ZapD -
  G7047_RS17145 (G7047_17150) - 3753486..3753707 (+) 222 WP_166307988.1 DNA gyrase inhibitor YacG -
  G7047_RS17150 (G7047_17155) - 3753708..3754154 (-) 447 WP_166307991.1 NUDIX domain-containing protein -
  G7047_RS17155 (G7047_17160) - 3754147..3755022 (-) 876 WP_166307994.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44349.11 Da        Isoelectric Point: 9.6389

>NTDB_id=428569 G7047_RS17125 WP_166307976.1 3749821..3751038(+) (pilC) [Diaphorobacter sp. HDW4A]
MATAASRGIKDFVYEWEGKDRGGKVVRGEIRAAGENQVKATLRRQGVLATKIKKRRMRSGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNSAFRKFPMYFDSLYCNLVEAGEQAGILEALLDRLATYMEKT
EAIKSKIRSALMYPCAVIVVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLIVMGISEFFVAYWWLIFGVIGGGGYFFM
QAWKRSEKMQRFMDRALLKMPIFGDLINKSCIARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYSEATTKIQNEVSTGT
SLTNAMTNANVFPSMVIQMVAIGEESGSIDHMLGKSADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=428569 G7047_RS17125 WP_166307976.1 3749821..3751038(+) (pilC) [Diaphorobacter sp. HDW4A]
ATGGCAACTGCAGCATCGAGGGGAATCAAGGACTTTGTCTACGAGTGGGAAGGCAAGGACCGCGGTGGCAAGGTCGTGCG
CGGCGAAATTCGTGCGGCTGGAGAAAATCAGGTCAAGGCCACGCTGCGCCGTCAGGGTGTACTGGCCACCAAGATCAAGA
AGCGCCGCATGCGCTCGGGCAAGAAGATCAAGCCCAAGGATATTGCGCTCTTCACCCGCCAGATGGCGACCATGATGAAG
GCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTCGGTCGCGGCAACACCAACCCCAGCGTGACCAAGCTGCTCAACGA
CATCCGCGGCGATGTGGAGACGGGCACGTCGCTGAACTCCGCCTTCCGCAAGTTCCCGATGTATTTCGACAGCCTCTACT
GCAACCTGGTAGAGGCCGGCGAACAGGCCGGTATTCTGGAAGCGCTGCTGGATCGTCTTGCAACCTACATGGAAAAGACG
GAGGCGATCAAGTCGAAGATCCGCTCCGCTCTGATGTATCCCTGTGCAGTGATCGTGGTGGCCTTCGTCGTGGTGACCGT
CATCATGATTTTCGTGATCCCGGCCTTCAAGGAAGTTTTCACTTCGTTCGGAGCCGACCTGCCAGCCCCCACCTTGATCG
TGATGGGTATCAGTGAGTTCTTTGTAGCCTATTGGTGGCTGATCTTCGGCGTCATCGGCGGCGGCGGATACTTCTTCATG
CAGGCATGGAAACGCAGCGAAAAAATGCAGCGCTTCATGGATCGCGCGCTGCTCAAGATGCCGATCTTCGGTGATCTGAT
CAACAAGTCCTGCATCGCACGCTGGACACGAACGCTCTCCACCATGTTCGCTGCAGGTGTTCCGCTAGTGGAAGCGCTGG
ATTCAGTGGGTGGTGCCTCCGGCAACTCGGTGTACAGCGAAGCCACGACCAAGATCCAGAACGAGGTCTCGACCGGTACC
AGCCTGACCAATGCCATGACGAACGCGAACGTGTTTCCGTCAATGGTGATCCAGATGGTGGCCATCGGTGAAGAATCGGG
TTCCATCGACCACATGCTGGGCAAGTCAGCCGACTTCTATGAAGCCGAGGTGGACGAAATGGTAGCGGGCCTCTCCAGCC
TGATGGAGCCAATCATCATCGTGTTCCTCGGCACATTGATCGGTGGTATCGTGGTGTCCATGTACCTCCCCATCTTCAAG
CTGGGTCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8CRF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.95

99.753

0.548
  pilG Neisseria gonorrhoeae MS11

52.525

97.778

0.514
  pilG Neisseria meningitidis 44/76-A

52.273

97.778

0.511
  pilC Acinetobacter baylyi ADP1

51.256

98.272

0.504
  pilC Legionella pneumophila strain ERS1305867

51.01

97.778

0.499
  pilC Acinetobacter baumannii D1279779

50.63

98.025

0.496
  pilC Vibrio cholerae strain A1552

40.955

98.272

0.402
  pilC Vibrio campbellii strain DS40M4

39.599

98.519

0.39
  pilC Thermus thermophilus HB27

37.44

100

0.383