Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G7048_RS05605 Genome accession   NZ_CP049905
Coordinates   1171735..1172952 (+) Length   405 a.a.
NCBI ID   WP_166067189.1    Uniprot ID   A0A6G8BTE6
Organism   Diaphorobacter sp. HDW4B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1166735..1177952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7048_RS05580 (G7048_05575) rpmA 1167589..1167846 (-) 258 WP_166067186.1 50S ribosomal protein L27 -
  G7048_RS05585 (G7048_05580) rplU 1167860..1168171 (-) 312 WP_166067187.1 50S ribosomal protein L21 -
  G7048_RS05590 (G7048_05585) - 1168494..1169423 (+) 930 WP_166070816.1 polyprenyl synthetase family protein -
  G7048_RS05600 (G7048_05595) pilB 1169968..1171707 (+) 1740 WP_166067188.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G7048_RS05605 (G7048_05600) pilC 1171735..1172952 (+) 1218 WP_166067189.1 type II secretion system F family protein Machinery gene
  G7048_RS05610 (G7048_05605) - 1172970..1173911 (+) 942 WP_371747651.1 A24 family peptidase -
  G7048_RS05615 (G7048_05610) coaE 1174006..1174548 (+) 543 WP_371747652.1 dephospho-CoA kinase -
  G7048_RS05620 (G7048_05615) zapD 1174620..1175375 (+) 756 WP_166067192.1 cell division protein ZapD -
  G7048_RS05625 (G7048_05620) - 1175397..1175618 (+) 222 WP_166067193.1 DNA gyrase inhibitor YacG -
  G7048_RS05630 (G7048_05625) - 1175652..1176101 (-) 450 WP_166067195.1 NUDIX domain-containing protein -
  G7048_RS05635 (G7048_05630) - 1176094..1176969 (-) 876 WP_166067196.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44307.07 Da        Isoelectric Point: 9.6625

>NTDB_id=428541 G7048_RS05605 WP_166067189.1 1171735..1172952(+) (pilC) [Diaphorobacter sp. HDW4B]
MATAASRGIKDFVFEWEGKDRSGKVVRGEIRAAGENQVKATLRRQGVLATKIKKRRMRSGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRSDVETGTSLNAAFRKFPMYFDSLYCNLVEAGEQAGILESLLDRLATYMEKT
EAIKSKIKSALMYPCAVVVVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLIVMGISEFFVAYWWLIFGVIGGGGYFFM
QAWKRSEKMQRFMDRALLKMPIFGDLINKSCIARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYSEATTKIQNEVSTGT
SLTNAMTNANVFPSMVIQMVAIGEESGSIDHMLGKSADFYEAEVDEMVAGLSSLMEPIIIVFLGGLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=428541 G7048_RS05605 WP_166067189.1 1171735..1172952(+) (pilC) [Diaphorobacter sp. HDW4B]
ATGGCAACTGCAGCATCGAGGGGAATCAAGGACTTCGTCTTTGAGTGGGAAGGCAAGGACCGCAGTGGCAAGGTCGTGCG
CGGTGAAATTCGCGCGGCTGGTGAAAATCAGGTCAAGGCCACCTTGCGCCGTCAGGGCGTGCTCGCCACCAAGATCAAGA
AGCGCCGCATGCGCTCGGGCAAGAAGATCAAGCCCAAGGACATCGCGCTGTTCACTCGCCAGATGGCGACGATGATGAAA
GCGGGTGTGCCCTTGCTGCAGGCCTTTGACATTGTGGGCCGCGGCAACACGAATCCCAGCGTCACCAAGCTGCTCAACGA
CATCCGCAGCGATGTGGAAACCGGTACGTCGCTGAACGCCGCTTTCCGCAAATTTCCGATGTATTTCGACAGCCTCTACT
GCAATCTGGTCGAGGCCGGCGAGCAGGCCGGTATTCTGGAATCGCTGCTGGATCGCTTGGCGACCTACATGGAAAAGACA
GAAGCGATCAAGTCCAAGATCAAATCTGCCTTGATGTATCCGTGTGCTGTGGTGGTGGTCGCCTTCGTGGTGGTGACCGT
GATCATGATTTTCGTGATTCCTGCGTTCAAGGAAGTCTTTACCTCGTTCGGTGCCGACCTGCCTGCTCCCACCTTGATCG
TGATGGGCATCAGCGAGTTCTTCGTTGCCTATTGGTGGCTGATCTTCGGCGTCATTGGCGGCGGCGGCTACTTCTTCATG
CAGGCATGGAAGCGCAGCGAGAAGATGCAGCGGTTCATGGATCGCGCTCTTCTGAAAATGCCTATCTTTGGTGACCTGAT
CAACAAGTCCTGTATCGCGCGCTGGACACGAACCCTCTCCACCATGTTCGCCGCCGGTGTTCCCTTGGTGGAAGCGCTGG
ACTCGGTGGGTGGTGCCTCGGGCAATTCGGTGTACAGCGAAGCCACGACCAAGATCCAGAACGAAGTATCGACGGGCACC
AGCCTGACCAATGCGATGACCAATGCGAACGTCTTCCCATCCATGGTCATCCAGATGGTGGCCATCGGTGAAGAATCCGG
TTCGATCGACCACATGCTTGGCAAGTCCGCCGACTTCTATGAAGCGGAAGTGGACGAAATGGTGGCGGGCCTCTCCAGTC
TGATGGAGCCCATCATCATCGTGTTCCTCGGCGGCCTGATTGGCGGTATCGTCGTGTCGATGTACCTGCCTATCTTCAAG
CTCGGCCAGGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8BTE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.446

99.753

0.553
  pilG Neisseria gonorrhoeae MS11

53.03

97.778

0.519
  pilG Neisseria meningitidis 44/76-A

52.778

97.778

0.516
  pilC Acinetobacter baylyi ADP1

51.508

98.272

0.506
  pilC Legionella pneumophila strain ERS1305867

51.256

98.272

0.504
  pilC Acinetobacter baumannii D1279779

50.378

98.025

0.494
  pilC Vibrio cholerae strain A1552

40.704

98.272

0.4
  pilC Vibrio campbellii strain DS40M4

39.85

98.519

0.393
  pilC Thermus thermophilus HB27

36.957

100

0.378