Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G7069_RS01265 Genome accession   NZ_CP049864
Coordinates   260394..261647 (+) Length   417 a.a.
NCBI ID   WP_166293476.1    Uniprot ID   A0A6G7YUC9
Organism   Lysobacter sp. HDW10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 255394..266647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G7069_RS01250 (G7069_01250) - 256552..257718 (-) 1167 WP_166293472.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  G7069_RS01255 (G7069_01255) - 257723..258580 (-) 858 WP_166293474.1 glycosyltransferase family 2 protein -
  G7069_RS01260 (G7069_01260) pilB 258649..260391 (+) 1743 WP_205758729.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G7069_RS01265 (G7069_01265) pilC 260394..261647 (+) 1254 WP_166293476.1 type II secretion system F family protein Machinery gene
  G7069_RS01270 (G7069_01270) - 261651..262517 (+) 867 WP_166293478.1 A24 family peptidase -
  G7069_RS01275 (G7069_01275) coaE 262519..263124 (+) 606 WP_166293480.1 dephospho-CoA kinase -
  G7069_RS01280 (G7069_01280) - 263169..263417 (-) 249 WP_166293482.1 hypothetical protein -
  G7069_RS01285 (G7069_01285) - 263654..264604 (+) 951 WP_166293484.1 Nudix family hydrolase -
  G7069_RS01290 (G7069_01290) - 264801..264947 (+) 147 WP_166293486.1 hypothetical protein -
  G7069_RS01295 (G7069_01295) - 265034..265240 (+) 207 WP_166293488.1 hypothetical protein -
  G7069_RS01300 (G7069_01300) - 265697..265882 (-) 186 WP_205758730.1 hypothetical protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45262.41 Da        Isoelectric Point: 10.0297

>NTDB_id=428237 G7069_RS01265 WP_166293476.1 260394..261647(+) (pilC) [Lysobacter sp. HDW10]
MAASKTAVRGTAGADKLDTFVWKGTDKRGVVMKGEQTGKSLNLVKAELRKQGINPTDVKMKRKSMFGNKGGKAIKPLDIA
IFSRMWATMMKSGVPIVQSLEIIGSGQKNPRMATMVNQVRDDISGGNSLYDSLSKHPVQFDELYRNLVRAGESAGVLETV
LETIASYKENIEAIKGKIKKALFYPAMIIVVAILVSAVLLIFVVPQFEEVFKGFGAELPAFTKMIVAASKFLVAYWWIML
LIAVAAIAGFIFAYKRSVPMQHAIDRISLRLPIIGKILNDSAVARFSRTLAVTFAAGVPLVEALDSVAGATGNSVYTEAV
HRIREDVAVGYNVNTAMKQTNLFPHMVVQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALASLIEPFVMVIIGVLVGS
MVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=428237 G7069_RS01265 WP_166293476.1 260394..261647(+) (pilC) [Lysobacter sp. HDW10]
ATGGCCGCTAGCAAGACAGCAGTAAGGGGAACCGCAGGCGCCGACAAGTTGGACACCTTCGTTTGGAAGGGCACCGACAA
GCGTGGCGTCGTGATGAAAGGCGAGCAGACGGGCAAGAGCCTGAATCTGGTCAAGGCCGAGTTGCGCAAGCAAGGCATCA
ACCCGACTGACGTAAAAATGAAGCGTAAGTCGATGTTCGGCAACAAAGGTGGCAAGGCCATCAAGCCGCTCGACATCGCG
ATCTTCAGCCGGATGTGGGCCACCATGATGAAGTCCGGCGTGCCAATTGTGCAGTCCTTGGAAATCATTGGGTCTGGCCA
AAAAAATCCGAGAATGGCCACGATGGTCAATCAAGTTCGTGATGACATCTCCGGTGGTAACTCGCTCTATGACTCTCTGA
GCAAGCACCCCGTGCAGTTCGATGAGCTCTATCGCAACTTGGTGCGCGCAGGTGAAAGCGCCGGTGTGCTCGAAACCGTG
CTGGAAACGATCGCCTCCTACAAAGAAAACATCGAGGCCATCAAAGGCAAGATCAAGAAGGCCCTGTTCTATCCCGCCAT
GATTATCGTGGTTGCGATCTTGGTCAGTGCCGTGTTGCTGATTTTCGTCGTGCCGCAGTTTGAAGAAGTGTTCAAAGGCT
TTGGTGCAGAGCTTCCGGCATTCACCAAAATGATTGTCGCGGCCAGTAAGTTCTTGGTGGCTTACTGGTGGATTATGTTG
CTCATCGCGGTCGCTGCGATTGCCGGCTTCATATTCGCCTACAAGCGCTCGGTGCCAATGCAGCATGCAATTGACCGGAT
TTCATTGCGCCTTCCGATTATTGGCAAGATTTTGAATGACTCTGCCGTCGCACGGTTCTCGCGCACCTTGGCTGTGACCT
TTGCCGCAGGCGTGCCATTGGTTGAAGCACTTGACTCTGTGGCCGGTGCAACGGGCAACAGCGTGTATACCGAGGCAGTT
CATCGCATTCGCGAAGACGTCGCAGTGGGCTATAACGTCAACACCGCCATGAAACAAACCAACCTCTTCCCACACATGGT
TGTTCAGATGACTGCCATCGGTGAAGAAGCAGGTGCACTCGACACCATGTTGTTCAAAGTGGCCGAGTTCTACGAACAAG
AAGTCAACAATGCCGTCGATGCATTGGCCTCGTTGATCGAACCGTTCGTGATGGTGATCATCGGCGTGTTGGTGGGCAGC
ATGGTGATTGGTATGTACTTGCCGATCTTCAAACTCGCATCCGTCGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(82-205)

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7YUC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.364

96.163

0.523
  pilC Legionella pneumophila strain ERS1305867

53.75

95.923

0.516
  pilC Acinetobacter baylyi ADP1

50.481

99.76

0.504
  pilC Acinetobacter baumannii D1279779

50.372

96.643

0.487
  pilG Neisseria gonorrhoeae MS11

42.998

97.602

0.42
  pilG Neisseria meningitidis 44/76-A

42.506

97.602

0.415
  pilC Thermus thermophilus HB27

39.651

96.163

0.381
  pilC Vibrio campbellii strain DS40M4

38.78

98.321

0.381
  pilC Vibrio cholerae strain A1552

39.401

96.163

0.379