Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G8E09_RS17475 Genome accession   NZ_CP049806
Coordinates   3699690..3700916 (+) Length   408 a.a.
NCBI ID   WP_167564184.1    Uniprot ID   A0A6H0FY84
Organism   Acinetobacter pittii strain A1254     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3694690..3705916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8E09_RS17440 (G8E09_17430) rimP 3695361..3695885 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  G8E09_RS17460 (G8E09_17450) secG 3696523..3696852 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  G8E09_RS17465 (G8E09_17455) tpiA 3696865..3697659 (-) 795 WP_046812055.1 triose-phosphate isomerase -
  G8E09_RS17470 (G8E09_17460) pilB 3697951..3699663 (+) 1713 WP_167564183.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G8E09_RS17475 (G8E09_17465) pilC 3699690..3700916 (+) 1227 WP_167564184.1 type II secretion system F family protein Machinery gene
  G8E09_RS17480 (G8E09_17470) pilD 3700916..3701776 (+) 861 WP_068612639.1 prepilin peptidase Machinery gene
  G8E09_RS17485 (G8E09_17475) coaE 3701778..3702374 (+) 597 WP_005065869.1 dephospho-CoA kinase -
  G8E09_RS17490 (G8E09_17480) - 3702371..3703285 (-) 915 WP_167564185.1 DMT family transporter -
  G8E09_RS17495 (G8E09_17485) rlmB 3703321..3704070 (-) 750 WP_016142380.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G8E09_RS17500 (G8E09_17490) - 3704173..3704499 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  G8E09_RS17505 (G8E09_17495) - 3704576..3705886 (-) 1311 WP_086400331.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45041.48 Da        Isoelectric Point: 9.8207

>NTDB_id=428000 G8E09_RS17475 WP_167564184.1 3699690..3700916(+) (pilC) [Acinetobacter pittii strain A1254]
MTIKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=428000 G8E09_RS17475 WP_167564184.1 3699690..3700916(+) (pilC) [Acinetobacter pittii strain A1254]
ATGACTATCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACAATTTTTACTAGGCAACTTGCAACG
ATGATGAAAGCAGGTGTACCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGGTTAGATAAACTTACACTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTGGCT
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGAT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTAGTGATTGCGATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0FY84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365