NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	G8E09_RS17480	Genome accession	NZ_CP049806
Coordinates	3700916..3701776 (+)	Length	286 a.a.
NCBI ID	WP_068612639.1	Uniprot ID	A0A6H0FYE8
Organism	Acinetobacter pittii strain A1254
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3695916..3706776

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G8E09_RS17460 (G8E09_17450)	secG	3696523..3696852 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
G8E09_RS17465 (G8E09_17455)	tpiA	3696865..3697659 (-)	795	WP_046812055.1	triose-phosphate isomerase	-
G8E09_RS17470 (G8E09_17460)	pilB	3697951..3699663 (+)	1713	WP_167564183.1	type IV-A pilus assembly ATPase PilB	Machinery gene
G8E09_RS17475 (G8E09_17465)	pilC	3699690..3700916 (+)	1227	WP_167564184.1	type II secretion system F family protein	Machinery gene
G8E09_RS17480 (G8E09_17470)	pilD	3700916..3701776 (+)	861	WP_068612639.1	prepilin peptidase	Machinery gene
G8E09_RS17485 (G8E09_17475)	coaE	3701778..3702374 (+)	597	WP_005065869.1	dephospho-CoA kinase	-
G8E09_RS17490 (G8E09_17480)	-	3702371..3703285 (-)	915	WP_167564185.1	DMT family transporter	-
G8E09_RS17495 (G8E09_17485)	rlmB	3703321..3704070 (-)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
G8E09_RS17500 (G8E09_17490)	-	3704173..3704499 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
G8E09_RS17505 (G8E09_17495)	-	3704576..3705886 (-)	1311	WP_086400331.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32127.63 Da Isoelectric Point: 7.0000

                                >NTDB_id=428001 G8E09_RS17480 WP_068612639.1 3700916..3701776(+) (pilD) [Acinetobacter pittii strain A1254]

MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEQEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLVLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=428001 G8E09_RS17480 WP_068612639.1 3700916..3701776(+) (pilD) [Acinetobacter pittii strain A1254]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG

TAGCTTTTTGAATGTGGTAATTTATCGCACCCCAAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA

ATCCCGAACTACCCATCATTGAGCAAGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA

TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT

TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG

ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTACG

GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGGTGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6H0FYE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437

Detailed information NTG0428001