Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G4D77_RS22425 Genome accession   NZ_CP049795
Coordinates   4873917..4875134 (-) Length   405 a.a.
NCBI ID   WP_017405526.1    Uniprot ID   A0AAU0LKH0
Organism   Delftia sp. WY8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4868917..4880134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D77_RS22395 - 4869748..4870704 (+) 957 WP_154833619.1 ATP-binding protein -
  G4D77_RS22400 - 4870755..4871261 (+) 507 WP_016445605.1 NUDIX domain-containing protein -
  G4D77_RS22405 - 4871272..4871508 (-) 237 WP_223275109.1 DNA gyrase inhibitor YacG -
  G4D77_RS22410 zapD 4871526..4872281 (-) 756 WP_016445607.1 cell division protein ZapD -
  G4D77_RS22415 coaE 4872371..4873009 (-) 639 WP_154833620.1 dephospho-CoA kinase -
  G4D77_RS22420 pilD 4873024..4873917 (-) 894 WP_154833621.1 A24 family peptidase Machinery gene
  G4D77_RS22425 pilC 4873917..4875134 (-) 1218 WP_017405526.1 type II secretion system F family protein Machinery gene
  G4D77_RS22430 pilB 4875173..4876915 (-) 1743 WP_034364744.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G4D77_RS22440 - 4877152..4878081 (-) 930 WP_213757994.1 polyprenyl synthetase family protein -
  G4D77_RS22445 rplU 4878312..4878623 (+) 312 WP_012207284.1 50S ribosomal protein L21 -
  G4D77_RS22450 rpmA 4878639..4878896 (+) 258 WP_012207283.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44432.27 Da        Isoelectric Point: 9.3922

>NTDB_id=427839 G4D77_RS22425 WP_017405526.1 4873917..4875134(-) (pilC) [Delftia sp. WY8]
MATAASKGIKEFVFEWEGKDRNGKIIRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRADVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIVVAFIVVTIIMIFVIPAFKEVFSSFGADLPAPTLFVMGISDVFVQWWWLIFGVIGGGLYFFM
QAWKRNERMQQFMDRTLLKVPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=427839 G4D77_RS22425 WP_017405526.1 4873917..4875134(-) (pilC) [Delftia sp. WY8]
ATGGCCACAGCCGCGTCCAAGGGAATCAAGGAATTTGTCTTCGAATGGGAAGGCAAGGATCGCAACGGCAAGATCATCCG
AGGCGAGACCCGGGCCGGGGGCATCAACCAGGTCCAGGCCATGCTACGCCGCCAGGGCGTGCTGCCCAGCAAGATCAAGA
AGCGCCGCACACGCGGGGGCAAGAGGATCAAGCCCAAGGACATTGCGCTGTTCACCCGCCAGATGGCAACGATGATGAAG
GCGGGCGTCCCGCTGCTTCAGGCCTTCGACATTGTCGGACGGGGCAACACCAACCCCAGCGTGACGCGCCTTCTGGCCGA
TATTCGCGCCGACGTGGAGACCGGCACCTCGCTGAACGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAGGCGGGCGAAGCGGCCGGTATCCTGGAAGCCCTGCTGGACCGCCTGGCCACGTACATGGAGAAGACC
GAGGCCATCAAGTCCAAGATCAAATCGGCGCTGATGTACCCGATCTCGGTCATCGTCGTGGCCTTCATCGTCGTGACCAT
CATCATGATTTTCGTGATCCCGGCCTTCAAGGAAGTGTTCAGTTCGTTCGGCGCCGACCTGCCGGCGCCGACGCTGTTCG
TTATGGGCATCAGCGATGTCTTTGTCCAATGGTGGTGGTTGATCTTCGGCGTGATTGGCGGCGGTCTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCATGCAGCAATTCATGGACCGTACGCTGCTGAAGGTGCCGGTCTTTGGCGTGCTGAT
CGAGAAATCCTGCGTCGCACGCTGGACGCGCACGCTGTCGACCATGTTTGCCGCGGGCGTCCCATTGGTCGAGGCACTGG
ATTCTGTCGGCGGCGCATCCGGCAATGCCGTGTATGCCAATGCCACGGAAAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGTCTCACCGTGGCCATGACCAATGCCAATGTCTTTCCGTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCCATCGACCATATGCTGGGCAAGGCGGCCGATTTCTATGAAGAAGAGGTCGATGACATGGTGGCTGGCCTGTCCAGCC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTATCTGCCCATCTTCAAG
CTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.753

0.551
  pilG Neisseria gonorrhoeae MS11

50.25

98.765

0.496
  pilG Neisseria meningitidis 44/76-A

50

98.765

0.494
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Acinetobacter baylyi ADP1

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

47.859

98.025

0.469
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

39.043

98.025

0.383
  pilC Thermus thermophilus HB27

37.25

98.765

0.368