Detailed information NTG0427838

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G4D77_RS22420
• Genome accession: NZ_CP049795
• Coordinates: 4873024..4873917 (-)
• Length: 297 a.a.
• NCBI ID: WP_154833621.1
• Uniprot ID: -
• Organism: Delftia sp. WY8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4868024..4878917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G4D77_RS22390	argJ	4868350..4869582 (+)	1233	WP_016445603.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
G4D77_RS22395	-	4869748..4870704 (+)	957	WP_154833619.1	ATP-binding protein	-
G4D77_RS22400	-	4870755..4871261 (+)	507	WP_016445605.1	NUDIX domain-containing protein	-
G4D77_RS22405	-	4871272..4871508 (-)	237	WP_223275109.1	DNA gyrase inhibitor YacG	-
G4D77_RS22410	zapD	4871526..4872281 (-)	756	WP_016445607.1	cell division protein ZapD	-
G4D77_RS22415	coaE	4872371..4873009 (-)	639	WP_154833620.1	dephospho-CoA kinase	-
G4D77_RS22420	pilD	4873024..4873917 (-)	894	WP_154833621.1	A24 family peptidase	Machinery gene
G4D77_RS22425	pilC	4873917..4875134 (-)	1218	WP_017405526.1	type II secretion system F family protein	Machinery gene
G4D77_RS22430	pilB	4875173..4876915 (-)	1743	WP_034364744.1	type IV-A pilus assembly ATPase PilB	Machinery gene
G4D77_RS22440	-	4877152..4878081 (-)	930	WP_213757994.1	polyprenyl synthetase family protein	-
G4D77_RS22445	rplU	4878312..4878623 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
G4D77_RS22450	rpmA	4878639..4878896 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31842.41 Da
• Isoelectric Point: 7.2386

>NTDB_id=427838 G4D77_RS22420 WP_154833621.1 4873024..4873917(-) (pilD) [Delftia sp. WY8]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEKSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=427838 G4D77_RS22420 WP_154833621.1 4873024..4873917(-) (pilD) [Delftia sp. WY8]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAACAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGAAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCGCTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.59	95.286	0.492
pilD	Vibrio campbellii strain DS40M4	46.416	98.653	0.458
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407