Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SMULJ23_RS01570 Genome accession   NC_017768
Coordinates   342414..342908 (+) Length   164 a.a.
NCBI ID   WP_002261867.1    Uniprot ID   Q8DSD8
Organism   Streptococcus mutans LJ23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 337414..347908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMULJ23_RS01550 (SMULJ23_0294) - 337774..338823 (+) 1050 WP_002267521.1 zinc-dependent alcohol dehydrogenase family protein -
  SMULJ23_RS01555 (SMULJ23_0295) mutY 339015..340160 (-) 1146 WP_014677766.1 A/G-specific adenine glycosylase -
  SMULJ23_RS10600 (SMULJ23_0296) - 341230..341400 (-) 171 WP_002269894.1 hypothetical protein -
  SMULJ23_RS01560 (SMULJ23_0297) - 341705..341950 (+) 246 WP_002263367.1 hypothetical protein -
  SMULJ23_RS01565 (SMULJ23_0298) rpsF 342106..342396 (+) 291 WP_002261866.1 30S ribosomal protein S6 -
  SMULJ23_RS01570 (SMULJ23_0299) ssbA 342414..342908 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  SMULJ23_RS01575 (SMULJ23_0300) rpsR 342938..343177 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SMULJ23_RS01580 (SMULJ23_0301) - 343444..344646 (-) 1203 WP_014677767.1 IS110 family transposase -
  SMULJ23_RS01585 (SMULJ23_0303) - 345119..345838 (+) 720 WP_014677769.1 TraX family protein -
  SMULJ23_RS01590 (SMULJ23_0304) hdrM 345846..346532 (-) 687 WP_014677770.1 hdrR negative regulator HdrM Regulator
  SMULJ23_RS10375 (SMULJ23_0305) hdrR 346529..346885 (-) 357 WP_002270703.1 LytTR family transcriptional regulator HdrR Regulator
  SMULJ23_RS01600 (SMULJ23_0306) - 347024..347686 (-) 663 WP_002265267.1 DUF1129 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.97 Da        Isoelectric Point: 4.7187

>NTDB_id=42662 SMULJ23_RS01570 WP_002261867.1 342414..342908(+) (ssbA) [Streptococcus mutans LJ23]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=42662 SMULJ23_RS01570 WP_002261867.1 342414..342908(+) (ssbA) [Streptococcus mutans LJ23]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT
GATCTTCCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DSD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.261

72.561

0.372
  ssb Glaesserella parasuis strain SC1401

32.62

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

69.512

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae D39

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae R6

50.42

72.561

0.366
  ssbB/cilA Streptococcus mitis SK321

50.42

72.561

0.366

Multiple sequence alignment