Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G5S32_RS02365 Genome accession   NZ_CP049331
Coordinates   505531..506757 (-) Length   408 a.a.
NCBI ID   WP_165310305.1    Uniprot ID   A0A6G7CFQ1
Organism   Vibrio ziniensis strain ZWAL4003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500531..511757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS02345 (G5S32_02345) yacG 502949..503152 (-) 204 WP_165310301.1 DNA gyrase inhibitor YacG -
  G5S32_RS02350 (G5S32_02350) zapD 503198..503938 (-) 741 WP_165310302.1 cell division protein ZapD -
  G5S32_RS02355 (G5S32_02355) coaE 503970..504578 (-) 609 WP_165310303.1 dephospho-CoA kinase -
  G5S32_RS02360 (G5S32_02360) pilD 504582..505451 (-) 870 WP_165310304.1 A24 family peptidase Machinery gene
  G5S32_RS02365 (G5S32_02365) pilC 505531..506757 (-) 1227 WP_165310305.1 type II secretion system F family protein Machinery gene
  G5S32_RS02370 (G5S32_02370) pilB 506778..508466 (-) 1689 WP_165310306.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G5S32_RS02375 (G5S32_02375) - 508463..508906 (-) 444 WP_165310307.1 pilin -
  G5S32_RS02380 (G5S32_02380) nadC 509135..510022 (-) 888 WP_165310308.1 carboxylating nicotinate-nucleotide diphosphorylase -
  G5S32_RS02385 (G5S32_02385) ampD 510157..510699 (+) 543 WP_165310309.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  G5S32_RS02390 (G5S32_02390) fldB 510746..511264 (-) 519 WP_165310310.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45554.05 Da        Isoelectric Point: 10.3238

>NTDB_id=426146 G5S32_RS02365 WP_165310305.1 505531..506757(-) (pilC) [Vibrio ziniensis strain ZWAL4003]
MRQRSTPQLSNFVWKGINCHGKRVSGRILAMTENDVRKKLSEQHIQVRKTKKYRISVFTRLFHRIRAKDITLLTRQLSTM
LTTGVPLVQALKIIASHHSKVEMKLVLSLISQGVESGTPISKTLRNTSTYFDSLYIDLVKTGEQVGNLAGIFDRLATYRE
KSEELKSKVIKALIYPITVLLVALGVSYLMLTLVIPEFESMFSNLGAELPWFTQQVLKLSHAIQTYSLVIVFILILSFIV
FRTVRQKSLAFRLKTSRFGLKCPVLGAVLTKAAIAKFSRTLATSFSSGIPILSGLKTTAKTAGIVYFEYAIDEVQNDIAS
GMPMHIAMRNTEAFPEMVLQMVMIGEESGKLDEMLNKIASIYELEVDNTVDNLGKILEPLLILFLGVVVGGLVIAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=426146 G5S32_RS02365 WP_165310305.1 505531..506757(-) (pilC) [Vibrio ziniensis strain ZWAL4003]
ATGAGGCAACGCTCTACTCCGCAACTCAGTAACTTTGTTTGGAAAGGCATAAACTGCCACGGAAAAAGAGTCTCTGGGCG
AATACTAGCCATGACAGAAAACGACGTCCGCAAGAAACTCTCTGAGCAACACATTCAAGTTAGAAAAACCAAAAAATACC
GCATATCCGTATTTACTCGCCTGTTTCACAGGATAAGAGCTAAAGACATTACTCTACTCACCCGCCAGCTATCAACAATG
CTAACCACCGGAGTTCCGTTAGTGCAGGCGTTAAAGATCATTGCTTCTCATCACAGTAAAGTGGAAATGAAGTTGGTGTT
ATCACTAATATCGCAAGGTGTTGAAAGTGGTACCCCTATTTCAAAAACCTTGCGTAACACTAGTACTTACTTTGATTCTC
TGTACATTGATTTAGTTAAAACTGGTGAGCAAGTAGGCAATTTAGCTGGTATTTTTGATCGTCTAGCAACTTATCGAGAA
AAAAGTGAAGAGTTAAAATCAAAAGTCATTAAAGCTTTAATTTATCCTATAACCGTCCTATTAGTTGCATTAGGCGTTTC
TTACCTGATGCTCACTTTAGTAATTCCAGAATTCGAGTCTATGTTCAGTAATTTGGGGGCGGAACTTCCATGGTTCACTC
AACAGGTATTAAAACTCTCGCACGCAATTCAAACTTATAGCCTAGTCATCGTTTTTATCCTGATTCTATCGTTTATAGTA
TTTCGCACAGTAAGACAAAAATCATTAGCATTTCGGCTAAAAACCAGCCGATTTGGTCTGAAATGTCCTGTTCTTGGCGC
AGTACTAACCAAAGCCGCTATAGCCAAATTTAGTCGTACTCTTGCCACTAGTTTCAGCTCTGGCATTCCGATTCTTTCCG
GTTTGAAAACAACCGCTAAAACCGCTGGTATTGTATATTTTGAATACGCTATAGATGAGGTTCAGAACGACATCGCATCA
GGAATGCCCATGCATATCGCAATGCGAAACACGGAAGCCTTTCCCGAAATGGTTCTGCAGATGGTGATGATTGGCGAAGA
ATCTGGAAAACTCGATGAGATGTTGAATAAAATTGCTTCAATTTACGAGCTTGAAGTCGACAATACCGTCGATAATCTGG
GTAAAATTCTCGAACCACTGCTCATTTTGTTTCTAGGTGTGGTGGTTGGTGGATTAGTTATAGCAATGTATTTGCCAATC
TTTAACTTAATGAGTGTGTTGGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CFQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

67.647

100

0.676
  pilC Vibrio campbellii strain DS40M4

63.682

98.529

0.627
  pilC Legionella pneumophila strain ERS1305867

41.975

99.265

0.417
  pilC Pseudomonas stutzeri DSM 10701

42.462

97.549

0.414
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Acinetobacter baylyi ADP1

39.706

100

0.397
  pilG Neisseria meningitidis 44/76-A

39.798

97.304

0.387
  pilG Neisseria gonorrhoeae MS11

39.547

97.304

0.385