Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G5S32_RS00190 Genome accession   NZ_CP049331
Coordinates   41777..42892 (+) Length   371 a.a.
NCBI ID   WP_165309945.1    Uniprot ID   A0A6G7CEJ0
Organism   Vibrio ziniensis strain ZWAL4003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 36777..47892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S32_RS00165 (G5S32_00165) trkA 36835..38211 (-) 1377 WP_165309941.1 Trk system potassium transporter TrkA -
  G5S32_RS00170 (G5S32_00170) rsmB 38274..39554 (-) 1281 WP_165309942.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  G5S32_RS00175 (G5S32_00175) fmt 39676..40623 (-) 948 WP_165309943.1 methionyl-tRNA formyltransferase -
  G5S32_RS00180 (G5S32_00180) def 40641..41153 (-) 513 WP_207621592.1 peptide deformylase -
  G5S32_RS00185 (G5S32_00185) - 41292..41774 (+) 483 WP_165309944.1 hypothetical protein -
  G5S32_RS00190 (G5S32_00190) dprA 41777..42892 (+) 1116 WP_165309945.1 DNA-processing protein DprA Machinery gene
  G5S32_RS00195 (G5S32_00195) - 42895..43371 (+) 477 WP_165309946.1 DUF494 family protein -
  G5S32_RS00200 (G5S32_00200) - 43387..43953 (+) 567 WP_165309947.1 type I DNA topoisomerase -
  G5S32_RS00205 (G5S32_00205) - 44013..45146 (-) 1134 WP_165309948.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  G5S32_RS00210 (G5S32_00210) purE 45150..45635 (-) 486 WP_165309949.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  G5S32_RS00215 (G5S32_00215) - 45879..46436 (+) 558 WP_165309950.1 L-threonylcarbamoyladenylate synthase -
  G5S32_RS00220 (G5S32_00220) hemF 46470..47384 (+) 915 WP_165309951.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 41025.75 Da        Isoelectric Point: 6.6642

>NTDB_id=426138 G5S32_RS00190 WP_165309945.1 41777..42892(+) (dprA) [Vibrio ziniensis strain ZWAL4003]
MEEHKLAPWLALNFTPKLSRKAITHLLSQDSLSNLSRYSAKHWHEAGLSSEQIHYLVHDAQREVDESLLWLSHHEERYII
TPFCDSYPALLQQISSKPNVLFVEGQLATLNQPQIAIVGSRNASIDSQKISYQFAAQLVEHDLLVTSGLALGVDGYAHDG
ALKAGGKTVAVLGSGLSSIYPMRHKNLAQRICENGALVSEFRPNAKPRPVNFPRRNRIISGLSMGVLVVEAAEKSGSLIT
ARYAMEQNRDVFVVPGSVFNPNSFGSNGLIRQGACLVQNVQHILDEINSMLDFNRLRHQQCQQTLFLPLNSEDELPFDEL
LANVGEEATPVDILASRTHIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=426138 G5S32_RS00190 WP_165309945.1 41777..42892(+) (dprA) [Vibrio ziniensis strain ZWAL4003]
ATGGAAGAACACAAGTTGGCGCCATGGTTAGCTTTAAACTTCACACCCAAACTGAGCAGGAAGGCGATAACACATTTGTT
AAGCCAAGATTCTCTATCTAACCTATCTCGCTATTCCGCTAAACATTGGCATGAGGCTGGGTTATCTTCCGAGCAGATCC
ACTACTTAGTTCATGACGCTCAGCGAGAGGTGGACGAGTCACTGCTGTGGTTAAGCCACCATGAAGAACGATACATTATT
ACGCCTTTTTGCGACTCTTACCCTGCACTGTTGCAGCAAATTTCTTCAAAACCCAATGTCCTTTTTGTGGAAGGTCAATT
AGCGACATTGAACCAGCCACAAATAGCGATTGTGGGCAGTCGCAATGCCAGTATTGATAGCCAGAAAATTTCCTACCAGT
TTGCCGCACAATTGGTTGAACACGACTTATTGGTGACCAGTGGCTTGGCATTAGGCGTTGATGGCTATGCCCATGATGGT
GCTCTAAAAGCGGGAGGTAAAACGGTTGCGGTATTAGGCTCAGGGCTTTCTTCCATTTACCCTATGAGGCATAAAAATCT
TGCGCAACGTATCTGCGAAAACGGTGCGTTAGTTTCGGAATTTCGTCCCAATGCCAAACCCCGGCCTGTAAATTTTCCTC
GCAGAAACCGAATAATTAGTGGTTTATCAATGGGGGTTCTGGTGGTAGAAGCGGCTGAAAAAAGCGGTTCTTTGATTACC
GCTCGTTATGCGATGGAACAAAATAGAGACGTTTTTGTTGTACCAGGCTCTGTTTTTAATCCAAATTCCTTTGGCAGCAA
TGGCTTAATTCGCCAGGGCGCATGTTTAGTTCAAAATGTACAACACATTCTTGATGAAATTAATTCTATGTTGGATTTCA
ATCGATTACGGCACCAGCAATGTCAGCAAACACTTTTTTTGCCGCTAAATAGCGAAGATGAATTGCCATTTGATGAGCTG
TTAGCTAACGTAGGAGAAGAAGCTACACCAGTTGATATTCTTGCAAGCAGGACCCATATACCTGTCCAAGAAGTCATGAT
GCAGCTCCTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)

DprA winged helix domain (DprA_WH)

(313-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7CEJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

60.647

100

0.606
  dprA Vibrio campbellii strain DS40M4

60.929

98.652

0.601
  dprA Glaesserella parasuis strain SC1401

43.548

100

0.437
  dprA Legionella pneumophila strain ERS1305867

42.466

98.383

0.418
  dprA Neisseria meningitidis MC58

36.25

100

0.391
  dprA Neisseria meningitidis strain C311

36.25

100

0.391
  dprA Neisseria gonorrhoeae strain FA1090

35.75

100

0.385
  dprA Neisseria gonorrhoeae MS11

35.5

100

0.383
  dprA Acinetobacter baylyi ADP1

36.554

100

0.377
  dprA Haemophilus influenzae Rd KW20

45.424

79.515

0.361