Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   CINF_RS04515 Genome accession   NZ_CP049075
Coordinates   878112..878342 (-) Length   76 a.a.
NCBI ID   WP_179974642.1    Uniprot ID   A0A7H9CIC0
Organism   Candidatus Campylobacter infans strain 19S00001     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 873112..883342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CINF_RS04485 (CINF_0894) - 873719..874927 (-) 1209 WP_179975899.1 hypothetical protein -
  CINF_RS04490 (CINF_0895) - 874920..875489 (-) 570 WP_178697451.1 hypothetical protein -
  CINF_RS04495 (CINF_0896) - 875877..876179 (-) 303 WP_179975900.1 hypothetical protein -
  CINF_RS04500 (CINF_0897) - 876183..876554 (-) 372 WP_179975901.1 hypothetical protein -
  CINF_RS04505 (CINF_0898) - 876556..876852 (-) 297 WP_179975902.1 hypothetical protein -
  CINF_RS04510 (CINF_0899) - 876854..877543 (-) 690 WP_179975903.1 hypothetical protein -
  CINF_RS04515 (CINF_0900) Cj0011c 878112..878342 (-) 231 WP_179974642.1 ComEA family DNA-binding protein Machinery gene
  CINF_RS04520 (CINF_0901) - 878491..878670 (-) 180 WP_179974643.1 hypothetical protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8009.72 Da        Isoelectric Point: 10.1971

>NTDB_id=424544 CINF_RS04515 WP_179974642.1 878112..878342(-) (Cj0011c) [Candidatus Campylobacter infans strain 19S00001]
MKKILVLLLALAGLMFGAVNINTASKEELMSLKGIGSAKADAIIAARPFNEIDDIKKVKGIGAVIFEGIKGEIIVK

Nucleotide


Download         Length: 231 bp        

>NTDB_id=424544 CINF_RS04515 WP_179974642.1 878112..878342(-) (Cj0011c) [Candidatus Campylobacter infans strain 19S00001]
ATGAAAAAGATTTTAGTGTTATTATTAGCTTTGGCTGGGCTTATGTTTGGCGCTGTAAATATCAACACGGCTAGCAAAGA
AGAGCTAATGAGCCTAAAAGGCATAGGCTCAGCAAAAGCCGATGCTATCATTGCTGCTAGGCCTTTTAATGAGATTGATG
ATATTAAAAAGGTTAAGGGCATTGGCGCTGTCATATTTGAGGGGATTAAGGGCGAAATCATCGTGAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H9CIC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.962

100

0.592
  comE Neisseria gonorrhoeae MS11

45.679

100

0.487
  comE Neisseria gonorrhoeae MS11

45.679

100

0.487
  comE Neisseria gonorrhoeae MS11

45.679

100

0.487
  comE Neisseria gonorrhoeae MS11

45.679

100

0.487
  comEA Bacillus subtilis subsp. subtilis str. 168

54.839

81.579

0.447
  comEA Staphylococcus aureus N315

50.82

80.263

0.408
  comEA Staphylococcus aureus MW2

50.82

80.263

0.408
  comEA Vibrio cholerae strain A1552

60

65.789

0.395
  comEA Vibrio cholerae C6706

60

65.789

0.395
  comEA Acinetobacter baumannii D1279779

45.902

80.263

0.368