Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   CINF_RS00105 Genome accession   NZ_CP049075
Coordinates   25555..25785 (+) Length   76 a.a.
NCBI ID   WP_179974642.1    Uniprot ID   A0A7H9CIC0
Organism   Candidatus Campylobacter infans strain 19S00001     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 20555..30785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CINF_RS00105 (CINF_0021) Cj0011c 25555..25785 (+) 231 WP_179974642.1 ComEA family DNA-binding protein Machinery gene
  CINF_RS00110 (CINF_0022) - 26501..27574 (+) 1074 WP_179975291.1 hypothetical protein -
  CINF_RS00115 (CINF_0023) - 27639..27848 (+) 210 WP_179974819.1 hypothetical protein -
  CINF_RS00120 (CINF_0024) - 27869..28099 (+) 231 WP_179974818.1 hypothetical protein -
  CINF_RS00125 (CINF_0025) - 28425..29693 (-) 1269 WP_178697439.1 citrate synthase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8009.72 Da        Isoelectric Point: 10.1971

>NTDB_id=424537 CINF_RS00105 WP_179974642.1 25555..25785(+) (Cj0011c) [Candidatus Campylobacter infans strain 19S00001]
MKKILVLLLALAGLMFGAVNINTASKEELMSLKGIGSAKADAIIAARPFNEIDDIKKVKGIGAVIFEGIKGEIIVK

Nucleotide


Download         Length: 231 bp        

>NTDB_id=424537 CINF_RS00105 WP_179974642.1 25555..25785(+) (Cj0011c) [Candidatus Campylobacter infans strain 19S00001]
ATGAAAAAGATTTTAGTGTTATTATTAGCTTTGGCTGGGCTTATGTTTGGCGCTGTAAATATCAACACGGCTAGCAAAGA
AGAGCTAATGAGCCTAAAAGGCATAGGCTCAGCAAAAGCCGATGCTATCATTGCTGCTAGGCCTTTTAATGAGATTGATG
ATATTAAAAAGGTTAAGGGCATTGGCGCTGTCATATTTGAGGGGATTAAGGGCGAAATCATCGTGAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H9CIC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.962

100

0.592
  comE Neisseria gonorrhoeae MS11

45.679

100

0.487
  comE Neisseria gonorrhoeae MS11

45.679

100

0.487
  comE Neisseria gonorrhoeae MS11

45.679

100

0.487
  comE Neisseria gonorrhoeae MS11

45.679

100

0.487
  comEA Bacillus subtilis subsp. subtilis str. 168

54.839

81.579

0.447
  comEA Staphylococcus aureus N315

50.82

80.263

0.408
  comEA Staphylococcus aureus MW2

50.82

80.263

0.408
  comEA Vibrio cholerae strain A1552

60

65.789

0.395
  comEA Vibrio cholerae C6706

60

65.789

0.395
  comEA Acinetobacter baumannii D1279779

45.902

80.263

0.368