Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   G3T13_RS06870 Genome accession   NZ_CP048686
Coordinates   1421305..1421634 (+) Length   109 a.a.
NCBI ID   WP_163604800.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain KACC 13441     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1416305..1426634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T13_RS06840 - 1416641..1416850 (-) 210 WP_061773793.1 YozE family protein -
  G3T13_RS06845 msrA 1416847..1417368 (-) 522 WP_061773792.1 peptide-methionine (S)-S-oxide reductase MsrA -
  G3T13_RS06850 - 1417365..1418228 (-) 864 WP_096824017.1 S1 RNA-binding domain-containing protein -
  G3T13_RS06860 - 1419049..1419672 (-) 624 WP_061773790.1 YigZ family protein -
  G3T13_RS06865 comFA/cflA 1419716..1420990 (+) 1275 WP_061773789.1 DEAD/DEAH box helicase Machinery gene
  G3T13_RS06870 comFC 1421305..1421634 (+) 330 WP_163604800.1 ComF family protein Machinery gene
  G3T13_RS06875 - 1421637..1422038 (-) 402 WP_061773787.1 diacylglycerol kinase family protein -
  G3T13_RS06880 ybeY 1422022..1422513 (-) 492 WP_061773786.1 rRNA maturation RNase YbeY -
  G3T13_RS06885 - 1422571..1423029 (-) 459 WP_061773785.1 HIT family protein -
  G3T13_RS06890 - 1423022..1424008 (-) 987 WP_061773784.1 PhoH family protein -
  G3T13_RS11475 - 1424005..1424181 (-) 177 WP_003137484.1 hypothetical protein -
  G3T13_RS06895 obgE 1424268..1425587 (-) 1320 WP_082785336.1 GTPase ObgE -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12126.92 Da        Isoelectric Point: 10.4051

>NTDB_id=422282 G3T13_RS06870 WP_163604800.1 1421305..1421634(+) (comFC) [Lactococcus raffinolactis strain KACC 13441]
MKGQTLVPVPVSPERLQSRGFNQVTGFLSSAKLPYLELLTKEETRHQSHKNRAERLASENPFHLKKNVTIPEHVVLVDDI
FTTGTTLKNGASILKNAGCAHVSTFSLFR

Nucleotide


Download         Length: 330 bp        

>NTDB_id=422282 G3T13_RS06870 WP_163604800.1 1421305..1421634(+) (comFC) [Lactococcus raffinolactis strain KACC 13441]
TTGAAGGGCCAAACTCTCGTGCCTGTGCCAGTTTCACCTGAACGACTACAAAGTAGAGGCTTTAATCAAGTCACGGGATT
TTTAAGTAGCGCTAAACTTCCTTATCTTGAACTCCTGACCAAAGAAGAAACGCGGCACCAATCTCACAAAAATCGTGCAG
AGCGCTTAGCTTCTGAAAATCCTTTTCATCTCAAGAAAAATGTTACCATCCCTGAGCACGTGGTTCTCGTAGATGATATT
TTCACGACAGGGACGACCCTTAAAAATGGTGCAAGCATATTAAAAAACGCAGGCTGCGCCCACGTTTCTACTTTTTCATT
ATTTCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(60-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

53.846

95.413

0.514
  comFC/cflB Streptococcus mitis NCTC 12261

50.926

99.083

0.505
  comFC/cflB Streptococcus mitis SK321

50

99.083

0.495
  comFC/cflB Streptococcus pneumoniae TIGR4

49.074

99.083

0.486
  comFC/cflB Streptococcus pneumoniae R6

49.074

99.083

0.486
  comFC/cflB Streptococcus pneumoniae Rx1

49.074

99.083

0.486
  comFC/cflB Streptococcus pneumoniae D39

49.074

99.083

0.486
  comFC Bacillus subtilis subsp. subtilis str. 168

40

96.33

0.385
  comFC Latilactobacillus sakei subsp. sakei 23K

37.615

100

0.376
  comFC Legionella pneumophila strain ERS1305867

34.188

100

0.367
  comFC Legionella pneumophila str. Paris

34.188

100

0.367

Multiple sequence alignment