Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G0029_RS14475 Genome accession   NZ_CP048670
Coordinates   2976345..2977571 (+) Length   408 a.a.
NCBI ID   WP_078192563.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2971345..2982571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS14430 (G0029_14415) rimP 2971738..2972262 (-) 525 WP_078192559.1 ribosome maturation factor RimP -
  G0029_RS14460 (G0029_14445) secG 2973193..2973522 (-) 330 WP_180084539.1 preprotein translocase subunit SecG -
  G0029_RS14465 (G0029_14450) tpiA 2973536..2974327 (-) 792 WP_180084538.1 triose-phosphate isomerase -
  G0029_RS14470 (G0029_14455) pilB 2974603..2976312 (+) 1710 WP_078192562.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G0029_RS14475 (G0029_14460) pilC 2976345..2977571 (+) 1227 WP_078192563.1 type II secretion system F family protein Machinery gene
  G0029_RS14480 (G0029_14465) pilD 2977571..2978431 (+) 861 WP_180106794.1 prepilin peptidase Machinery gene
  G0029_RS14485 (G0029_14470) coaE 2978441..2979043 (+) 603 WP_180106792.1 dephospho-CoA kinase -
  G0029_RS14490 (G0029_14475) - 2979058..2979978 (-) 921 WP_372491165.1 DMT family transporter -
  G0029_RS14495 (G0029_14480) rlmB 2979987..2980745 (-) 759 WP_180106790.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G0029_RS14500 (G0029_14485) - 2980922..2981245 (-) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44783.15 Da        Isoelectric Point: 9.8134

>NTDB_id=422211 G0029_RS14475 WP_078192563.1 2976345..2977571(+) (pilC) [Acinetobacter sp. YH12138 strain YH12138_T]
MAVKKAQMMPTFSYEGVDRKGAKIKGEMPSRNMALAKVTLRKQGITIKTIREKRKNILEGLMKKKVSTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPAAVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFFLIIGIGAVIA
GFMEAKKRSKAFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYETAVMKIREDVA
TGQQLQFAMRVTDKFPSMAIQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=422211 G0029_RS14475 WP_078192563.1 2976345..2977571(+) (pilC) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGGCTGTAAAAAAAGCGCAGATGATGCCAACCTTCAGTTATGAAGGCGTGGATCGCAAAGGGGCGAAAATCAAAGGGGA
AATGCCTTCGCGTAATATGGCTTTAGCTAAAGTCACTTTACGTAAGCAAGGCATCACCATTAAAACCATTCGAGAAAAAC
GTAAAAACATTCTCGAAGGCTTGATGAAAAAGAAAGTATCCACTTTGGATATCACGGTATTCACGCGCCAACTTGCAACC
ATGATGAAAGCCGGTGTACCGCTCGTTCAGGGGTTCGAAATCGTGGCGGAAGGCCTAGAAAACCCAGCCATGCGTGAAGT
GGTCCTGGGGATCAAAGGTGAAGTTGAAGGTGGCAATACATTTGCTGGTGCACTCCGTAAATATCCGCAGTATTTCGACA
ACCTATTTTGCTCCTTGGTTGAATCAGGTGAACAGTCGGGTGCACTTGAAACCATGTTAGACCGTGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCTGCGGTAATTGTTGTCGCTGTTATTGT
GACGATCATTTTGATGGTGAAAGTAGTTCCCGTATTCCAAGACTTGTTTTCATCGTTTGGTGCAGACCTACCTGCCTTTA
CCAAAATGGTAGTGAACATGTCGGAATGGATGCAAAAATATTGGTTCTTCCTCATCATTGGAATTGGCGCTGTGATTGCC
GGTTTCATGGAAGCAAAAAAACGTAGCAAAGCTTTCAGAGACTTCTTAGACAAAGCTGCACTCAAAGCACCGATTTTTGG
TGATTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGTACCTTGGCAACCACATTTGCCGCGGGTGTACCCTTAATCG
ATGCGCTCGAATCAACTGCAGGTGCAACCAACAACGTGGTCTATGAAACAGCAGTCATGAAAATTCGTGAAGATGTGGCG
ACTGGTCAACAGCTGCAGTTTGCGATGCGTGTCACTGATAAATTCCCATCTATGGCGATTCAAATGGTGGCTATTGGTGA
AGAATCCGGTGCCTTGGATGCTATGCTAGACAAAGTGGCAACCCATTATGAAAATGAAGTGGATAATGCCGTAGATGGCT
TAACTTCGATGATGGAACCCTTGATTATGGCGGTACTAGGTGTCCTCGTTGGTGGTCTTGTGATTGCAATGTATCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.196

100

0.902
  pilC Acinetobacter baylyi ADP1

84.069

100

0.841
  pilC Pseudomonas stutzeri DSM 10701

61.235

99.265

0.608
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria gonorrhoeae MS11

45.865

97.794

0.449
  pilG Neisseria meningitidis 44/76-A

45.614

97.794

0.446
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

40.295

99.755

0.402

Multiple sequence alignment