Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   G0029_RS14480 Genome accession   NZ_CP048670
Coordinates   2977571..2978431 (+) Length   286 a.a.
NCBI ID   WP_180106794.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2972571..2983431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS14460 (G0029_14445) secG 2973193..2973522 (-) 330 WP_180084539.1 preprotein translocase subunit SecG -
  G0029_RS14465 (G0029_14450) tpiA 2973536..2974327 (-) 792 WP_180084538.1 triose-phosphate isomerase -
  G0029_RS14470 (G0029_14455) pilB 2974603..2976312 (+) 1710 WP_078192562.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G0029_RS14475 (G0029_14460) pilC 2976345..2977571 (+) 1227 WP_078192563.1 type II secretion system F family protein Machinery gene
  G0029_RS14480 (G0029_14465) pilD 2977571..2978431 (+) 861 WP_180106794.1 prepilin peptidase Machinery gene
  G0029_RS14485 (G0029_14470) coaE 2978441..2979043 (+) 603 WP_180106792.1 dephospho-CoA kinase -
  G0029_RS14490 (G0029_14475) - 2979058..2979978 (-) 921 WP_372491165.1 DMT family transporter -
  G0029_RS14495 (G0029_14480) rlmB 2979987..2980745 (-) 759 WP_180106790.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G0029_RS14500 (G0029_14485) - 2980922..2981245 (-) 324 WP_067763086.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32001.47 Da        Isoelectric Point: 8.0503

>NTDB_id=422212 G0029_RS14480 WP_180106794.1 2977571..2978431(+) (pilD) [Acinetobacter sp. YH12138 strain YH12138_T]
MQELITYLINTPIALYIAVGIFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDETKITLSTPASTCPKCKMP
IRWYQNIPVISWIVLRGKCGSCQNPISSRYPLIELLTMICALIVVAVFGPTIQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYAIYTSATSAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPFLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGDQIMKIYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=422212 G0029_RS14480 WP_180106794.1 2977571..2978431(+) (pilD) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGCAAGAATTAATAACATATTTAATTAATACCCCAATTGCGTTATATATCGCAGTTGGGATTTTTAGTCTTTGCATCGG
TAGTTTTTTGAATGTGGTAATTTACCGCACACCAAAGATGATGGAACAAGAATGGCGTACGGATTGCCAACTGTTTTTAC
ATCCGGATCAACCGATTATTGACGAAACAAAGATCACACTGAGCACACCTGCTTCAACCTGCCCAAAATGCAAAATGCCC
ATTCGTTGGTATCAAAACATTCCGGTTATCAGTTGGATCGTTTTACGCGGAAAATGTGGAAGTTGCCAAAATCCAATCAG
TAGCCGTTATCCACTGATCGAATTACTCACCATGATCTGTGCGCTGATTGTTGTTGCAGTTTTTGGTCCAACTATCCAAA
TGCTGTTTGGTCTAGTGCTGACTTATGTATTGATTGCCTTAACATTTATTGACTTTGACACCCAACTTTTACCTGACCGC
TATACCCTTCCTTTGGCTGCACTCGGGCTTGGCGTGAATAGCTATGCCATTTATACCTCTGCAACCTCAGCCATTTGGGG
GTATATCATCGGGTTCTTATGCCTATGGATTGTTTACTATTTATTTAAAATCATCACTGGCAAAGAAGGCATGGGCTATG
GTGACTTTAAACTTTTAGCTGCGTTGGGTGCATGGATGGGCCCTTTCCTGCTCCCACTGATTGTATTACTCTCTTCACTG
GTAGGTGCAATCATTGGCATTATTTTGCTCAAAGTTCGTAAAGAAAACCAACCTTTTGCATTTGGTCCCTATATTGCCAT
CGCTGGATGGATCGCCTTTTTATGGGGTGATCAAATTATGAAAATTTATTTGGGTCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

80.702

99.65

0.804
  pilD Acinetobacter baumannii D1279779

80.702

99.65

0.804
  pilD Vibrio cholerae strain A1552

53.759

93.007

0.5
  pilD Vibrio campbellii strain DS40M4

53.184

93.357

0.497
  pilD Neisseria gonorrhoeae MS11

47.253

95.455

0.451

Multiple sequence alignment