Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G0028_RS17410 Genome accession   NZ_CP048659
Coordinates   3510555..3511781 (+) Length   408 a.a.
NCBI ID   WP_130072260.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3505555..3516781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS17370 (G0028_17345) rimP 3505897..3506421 (-) 525 WP_130072256.1 ribosome maturation factor RimP -
  G0028_RS17395 (G0028_17370) secG 3507232..3507564 (-) 333 WP_130072257.1 preprotein translocase subunit SecG -
  G0028_RS17400 (G0028_17375) tpiA 3507574..3508368 (-) 795 WP_180046476.1 triose-phosphate isomerase -
  G0028_RS17405 (G0028_17380) pilB 3508813..3510528 (+) 1716 WP_174493874.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G0028_RS17410 (G0028_17385) pilC 3510555..3511781 (+) 1227 WP_130072260.1 type II secretion system F family protein Machinery gene
  G0028_RS17415 (G0028_17390) pilD 3511781..3512644 (+) 864 WP_130072261.1 prepilin peptidase Machinery gene
  G0028_RS17420 (G0028_17395) coaE 3512656..3513252 (+) 597 WP_180046477.1 dephospho-CoA kinase -
  G0028_RS17425 (G0028_17400) - 3513320..3514237 (-) 918 WP_130072263.1 DMT family transporter -
  G0028_RS17430 (G0028_17405) rlmB 3514280..3515032 (-) 753 WP_174493878.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G0028_RS17435 (G0028_17410) - 3515172..3515495 (-) 324 WP_065993789.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44951.52 Da        Isoelectric Point: 9.9081

>NTDB_id=422179 G0028_RS17410 WP_130072260.1 3510555..3511781(+) (pilC) [Acinetobacter piscicola strain YH12207_T]
MAVKKAQMMPTFIYDGVDRKGVKIKGELPARNMALAKVTLRKQGINIKTIREKKKNILEGLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLDNPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDRLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPIAVIVVAIVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQSYWFILIIGIGVVIT
AFLETKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRLTNLFPSMAIQMVAIGEESGSLDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=422179 G0028_RS17410 WP_130072260.1 3510555..3511781(+) (pilC) [Acinetobacter piscicola strain YH12207_T]
ATGGCTGTCAAGAAAGCACAAATGATGCCGACATTCATTTATGACGGGGTAGATCGTAAAGGGGTTAAGATTAAAGGGGA
ACTGCCTGCGCGTAATATGGCTTTAGCCAAAGTCACACTAAGAAAACAAGGCATTAATATTAAAACCATTCGAGAAAAGA
AGAAAAATATTCTCGAGGGTTTAATGAAAAAGAAAGTCACCACTTTAGATATCACGATTTTTACTCGACAACTTGCGACC
ATGATGAAAGCGGGGGTACCTTTAGTACAAAGCTTTGAAATTGTTGCCGAAGGTCTAGATAATCCCGCAATGCGTGAAGT
CGTGTTAGGGATTAAAGGTGAAGTTGAAGGGGGGAATACTTTTGCTGGGGCATTAAAGAAATATCCTCAATATTTCGACC
GCTTGTTTTGCTCACTGGTTGAGTCAGGTGAACAATCGGGTGCACTTGAAACTATGTTAGACCGTGTCGCGATTTATAAA
GAAAAAAGTGAGCTTTTAAAACAAAAAATTAAAAAAGCCATGAAATATCCTATTGCAGTTATTGTCGTCGCAATCGTGGT
TACCATTATTTTGATGGTTAAAGTTGTTCCCGTTTTCCAAGATCTTTTCTCATCTTTTGGCGCTGATCTTCCTGCTTTCA
CTCAGATGGTGGTCAACATGTCAAAATGGATGCAAAGCTATTGGTTTATCTTGATTATTGGTATTGGGGTCGTGATTACT
GCATTTCTTGAAACCAAAAAGCGGAGTAAAAAATTTCGTGACTTCTTAGATAAAGCTGCACTCAAAGCCCCTATTTTTGG
CGACTTGGTCTATAAAGCAATTATTGCGCGTTATAGTCGTACGCTTGCCACGACCTTTGCAGCGGGTGTGCCATTAATTG
ATGCGCTCGAATCTACAGCAGGCGCAACCAATAATGTTGTTTATGAAGAAGCCGTAATGAAAATTCGTGATGACGTGGCA
ACAGGTCAACAATTACAATTTGCAATGCGCCTCACCAATTTATTCCCTTCAATGGCCATTCAAATGGTTGCAATTGGGGA
GGAATCAGGTTCGTTAGATGCCATGCTTGATAAAGTCGCAACACACTTTGAAAATGAAGTAGATAATGCGGTAGATGGCT
TAACCTCAATGATGGAGCCATTAATCATGGCTGTACTCGGGGTGCTTGTCGGTGGCCTCGTGATTGCCATGTACCTTCCA
ATCTTCCAAATGGGTTCTGTAGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.196

100

0.902
  pilC Acinetobacter baylyi ADP1

82.598

100

0.826
  pilC Pseudomonas stutzeri DSM 10701

60.741

99.265

0.603
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria meningitidis 44/76-A

47.99

97.549

0.468
  pilG Neisseria gonorrhoeae MS11

47.99

97.549

0.468
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404

Multiple sequence alignment