Detailed information NTG0422180

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G0028_RS17415
• Genome accession: NZ_CP048659
• Coordinates: 3511781..3512644 (+)
• Length: 287 a.a.
• NCBI ID: WP_130072261.1
• Uniprot ID: -
• Organism: Acinetobacter piscicola strain YH12207_T
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3506781..3517644

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G0028_RS17395 (G0028_17370)	secG	3507232..3507564 (-)	333	WP_130072257.1	preprotein translocase subunit SecG	-
G0028_RS17400 (G0028_17375)	tpiA	3507574..3508368 (-)	795	WP_180046476.1	triose-phosphate isomerase	-
G0028_RS17405 (G0028_17380)	pilB	3508813..3510528 (+)	1716	WP_174493874.1	type IV-A pilus assembly ATPase PilB	Machinery gene
G0028_RS17410 (G0028_17385)	pilC	3510555..3511781 (+)	1227	WP_130072260.1	type II secretion system F family protein	Machinery gene
G0028_RS17415 (G0028_17390)	pilD	3511781..3512644 (+)	864	WP_130072261.1	prepilin peptidase	Machinery gene
G0028_RS17420 (G0028_17395)	coaE	3512656..3513252 (+)	597	WP_180046477.1	dephospho-CoA kinase	-
G0028_RS17425 (G0028_17400)	-	3513320..3514237 (-)	918	WP_130072263.1	DMT family transporter	-
G0028_RS17430 (G0028_17405)	rlmB	3514280..3515032 (-)	753	WP_174493878.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
G0028_RS17435 (G0028_17410)	-	3515172..3515495 (-)	324	WP_065993789.1	pyrimidine/purine nucleoside phosphorylase	-
G0028_RS17440 (G0028_17415)	recN	3515768..3517429 (+)	1662	WP_180046479.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31845.20 Da
• Isoelectric Point: 7.7617

>NTDB_id=422180 G0028_RS17415 WP_130072261.1 3511781..3512644(+) (pilD) [Acinetobacter piscicola strain YH12207_T]
MADILNYFIITPSALYLLVGLLGLCIGSFLNVVIYRTPKMMEQEWQQECQLLLHPEQAIIDQSKLTLSTPASTCPKCKSP
IHWYQNIPVISWLVLRGQCGTCKNPISIRYPFIEVLTACCSLLVVAVYGPTLAMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINSFAIYTSATSAIWGYIIGFLCLWVVYYAFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQN

Nucleotide

• Length: 864 bp

>NTDB_id=422180 G0028_RS17415 WP_130072261.1 3511781..3512644(+) (pilD) [Acinetobacter piscicola strain YH12207_T]
ATGGCTGATATTCTCAACTATTTCATCATCACACCCAGTGCACTATATCTTTTGGTTGGTTTACTTGGTTTATGTATTGG
TAGTTTTTTAAATGTTGTGATTTATCGCACACCGAAAATGATGGAGCAAGAATGGCAACAAGAATGCCAACTCTTGCTGC
ATCCAGAACAAGCCATTATTGATCAAAGTAAACTGACATTAAGCACACCTGCTTCAACTTGTCCAAAATGTAAATCGCCG
ATTCATTGGTATCAAAACATTCCTGTGATCAGCTGGTTAGTTTTACGTGGTCAATGTGGCACATGTAAAAACCCAATTAG
CATTCGCTATCCATTTATTGAAGTCTTAACTGCCTGTTGCTCTCTTTTAGTGGTTGCGGTTTATGGACCAACGCTTGCGA
TGCTATTTGGTCTCATCCTAACATGGACACTTATTGCACTCACGTTTATCGATTTCGATACACAACTGCTGCCAGACCGC
TTCACTTTGCCTTTAGCTGCACTAGGTTTGGGTATTAATAGTTTTGCCATTTATACCTCTGCAACTTCTGCGATTTGGGG
CTATATCATCGGTTTTTTATGCTTATGGGTGGTCTATTATGCGTTTAAAATCATCACAGGCAAAGAAGGCATGGGCTATG
GCGATTTTAAATTACTCGCTGCTCTAGGCGCATGGATGGGACCTCTCATGCTACCGTTAATCGTCTTACTCTCCTCTTTG
GTGGGGGCGATTATTGGTATTATTTTACTTAAAGTTCGTAAAGAAAATCAGCCTTTCGCTTTTGGTCCTTATATCGCAAT
TGCGGGTTGGATTGCCTTTTTATGGGGCGAACAAATTATGAAAGTCTATTTAGGACAAAATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	80.351	99.303	0.798
pilD	Acinetobacter nosocomialis M2	80.351	99.303	0.798
pilD	Vibrio cholerae strain A1552	52.941	100	0.533
pilD	Vibrio campbellii strain DS40M4	48.772	99.303	0.484
pilD	Neisseria gonorrhoeae MS11	46.97	91.986	0.432