Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | ICI41_RS24065 | Genome accession | NZ_CP061376 |
| Coordinates | 5172259..5172726 (-) | Length | 155 a.a. |
| NCBI ID | WP_003161762.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain HS17-127 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5167259..5177726
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ICI41_RS24050 (ICI41_24045) | nadC | 5169759..5170607 (+) | 849 | WP_003116246.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ICI41_RS24060 (ICI41_24055) | - | 5170788..5172101 (-) | 1314 | WP_223218619.1 | O-antigen ligase family protein | - |
| ICI41_RS24065 (ICI41_24060) | pilA/pilAI | 5172259..5172726 (-) | 468 | WP_003161762.1 | pilin | Machinery gene |
| ICI41_RS24070 (ICI41_24065) | pilB | 5172957..5174658 (+) | 1702 | Protein_4774 | type IV-A pilus assembly ATPase PilB | - |
| ICI41_RS24075 (ICI41_24070) | pilC | 5174662..5175879 (+) | 1218 | WP_003107299.1 | type II secretion system F family protein | Machinery gene |
| ICI41_RS24080 (ICI41_24075) | pilD | 5175880..5176752 (+) | 873 | WP_003161765.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| ICI41_RS24085 (ICI41_24080) | coaE | 5176749..5177360 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| ICI41_RS24090 (ICI41_24085) | yacG | 5177357..5177557 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 15959.30 Da Isoelectric Point: 9.0145
>NTDB_id=421501 ICI41_RS24065 WP_003161762.1 5172259..5172726(-) (pilA/pilAI) [Pseudomonas aeruginosa strain HS17-127]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSKDNPADGEYDLGFTK
STLLAGNDGKAQITITGESSATPTIAGTLGNSAGKAISGAVITIKRSAEGVWTCAISGSPANWKANYAPANCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSKDNPADGEYDLGFTK
STLLAGNDGKAQITITGESSATPTIAGTLGNSAGKAISGAVITIKRSAEGVWTCAISGSPANWKANYAPANCPKS
Nucleotide
Download Length: 468 bp
>NTDB_id=421501 ICI41_RS24065 WP_003161762.1 5172259..5172726(-) (pilA/pilAI) [Pseudomonas aeruginosa strain HS17-127]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGTTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTTGTTTCCAAGGATAATCCCGCGGATGGGGAATATGATCTTGGTTTTACCAAG
TCTACTTTGCTTGCTGGCAACGACGGTAAGGCACAGATCACCATCACTGGCGAAAGCAGTGCAACCCCGACCATTGCGGG
GACTCTGGGTAACTCTGCTGGTAAGGCCATCAGCGGTGCCGTTATCACCATCAAGCGTAGTGCTGAGGGAGTCTGGACCT
GTGCTATCAGTGGGTCTCCGGCCAACTGGAAAGCCAACTACGCTCCGGCCAACTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGTTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTTGTTTCCAAGGATAATCCCGCGGATGGGGAATATGATCTTGGTTTTACCAAG
TCTACTTTGCTTGCTGGCAACGACGGTAAGGCACAGATCACCATCACTGGCGAAAGCAGTGCAACCCCGACCATTGCGGG
GACTCTGGGTAACTCTGCTGGTAAGGCCATCAGCGGTGCCGTTATCACCATCAAGCGTAGTGCTGAGGGAGTCTGGACCT
GTGCTATCAGTGGGTCTCCGGCCAACTGGAAAGCCAACTACGCTCCGGCCAACTGCCCGAAATCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.679 |
100 |
0.477 |
| pilA | Pseudomonas aeruginosa PAK |
40.964 |
100 |
0.439 |
| pilA | Acinetobacter baumannii strain A118 |
43.312 |
100 |
0.439 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.427 |
100 |
0.413 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.262 |
90.968 |
0.394 |
| pilA | Vibrio cholerae strain A1552 |
43.262 |
90.968 |
0.394 |
| pilA | Vibrio cholerae C6706 |
43.262 |
90.968 |
0.394 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.333 |
96.774 |
0.381 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.095 |
94.839 |
0.361 |