Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LCGT_RS01355 Genome accession   NC_015930
Coordinates   271067..271456 (+) Length   129 a.a.
NCBI ID   WP_014024245.1    Uniprot ID   A0AA43PFR7
Organism   Lactococcus garvieae ATCC 49156     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 266067..276456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCGT_RS01320 (LCGT_0258) - 266785..267294 (+) 510 WP_023889304.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LCGT_RS01325 (LCGT_0259) - 267284..267688 (+) 405 WP_016171015.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LCGT_RS01330 (LCGT_0260) - 267705..268388 (-) 684 WP_014024242.1 phosphatase PAP2 family protein -
  LCGT_RS01335 (LCGT_0261) pepA 268502..269569 (-) 1068 WP_014024243.1 glutamyl aminopeptidase -
  LCGT_RS01340 (LCGT_0262) - 269768..270055 (+) 288 WP_003133881.1 hypothetical protein -
  LCGT_RS01345 (LCGT_0263) - 270052..270372 (+) 321 WP_003133882.1 thioredoxin family protein -
  LCGT_RS01350 (LCGT_0264) ytpR 270374..270997 (+) 624 WP_014024244.1 YtpR family tRNA-binding protein -
  LCGT_RS01355 (LCGT_0265) ssbB 271067..271456 (+) 390 WP_014024245.1 single-stranded DNA-binding protein Machinery gene
  LCGT_RS01360 (LCGT_0266) - 271514..272044 (+) 531 WP_014024246.1 ClbS/DfsB family four-helix bundle protein -
  LCGT_RS01365 (LCGT_0267) groES 272161..272442 (+) 282 WP_003133888.1 co-chaperone GroES -
  LCGT_RS01370 (LCGT_0268) groL 272471..274096 (+) 1626 WP_003133890.1 chaperonin GroEL -
  LCGT_RS01375 (LCGT_0269) - 274148..274960 (-) 813 WP_003133892.1 MBL fold metallo-hydrolase -
  LCGT_RS01380 (LCGT_0270) - 274957..276375 (-) 1419 WP_014024247.1 ATP-binding protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14730.90 Da        Isoelectric Point: 9.3830

>NTDB_id=42090 LCGT_RS01355 WP_014024245.1 271067..271456(+) (ssbB) [Lactococcus garvieae ATCC 49156]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=42090 LCGT_RS01355 WP_014024245.1 271067..271456(+) (ssbB) [Lactococcus garvieae ATCC 49156]
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCGTTTGACCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCGCTTAATTTAAAAGAAGACGAATTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

56.589

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae R6

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae Rx1

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae D39

50.769

100

0.512
  ssbB/cilA Streptococcus mitis SK321

50.769

100

0.512
  ssbA Streptococcus mutans UA159

50

100

0.504
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50

100

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372

Multiple sequence alignment