Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SPPN_RS11310 Genome accession   NC_015875
Coordinates   2188522..2189703 (+) Length   393 a.a.
NCBI ID   WP_000681604.1    Uniprot ID   A0AAW4C7S4
Organism   Streptococcus pseudopneumoniae IS7493     
Function   degrading CSP; selective degradation of ComEA and ComEC (predicted from homology)   
Competence regulation

Genomic Context


Location: 2183522..2194703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS11270 (SPPN_11360) - 2184576..2185118 (+) 543 WP_001158278.1 TetR/AcrR family transcriptional regulator -
  SPPN_RS11285 (SPPN_11365) comE 2185361..2186113 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  SPPN_RS11290 (SPPN_11370) comD/comD2 2186110..2187435 (-) 1326 WP_001048117.1 competence system sensor histidine kinase ComD Regulator
  SPPN_RS11295 (SPPN_11375) comC/comC1 2187456..2187581 (-) 126 WP_000799687.1 competence-stimulating peptide ComC Regulator
  SPPN_RS11305 (SPPN_11380) rlmH 2187860..2188339 (-) 480 WP_000695932.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SPPN_RS11310 (SPPN_11385) htrA 2188522..2189703 (+) 1182 WP_000681604.1 S1C family serine protease Regulator
  SPPN_RS11315 (SPPN_11390) spo0J 2189761..2190519 (+) 759 WP_000410378.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 41828.67 Da        Isoelectric Point: 6.1498

>NTDB_id=42049 SPPN_RS11310 WP_000681604.1 2188522..2189703(+) (htrA) [Streptococcus pseudopneumoniae IS7493]
MKHLKTFYKKWFQLLVVIVISFFSGALGSFSITQLTQKSSVNNSNNNSTITQTAYKNENSTTQAVNKVKDAVVSVITYSA
NRQNSVFGNDETDTDSQQISSEGSGVIYKKNDKEAYIVTNNHVINGASKVDIRLSDGTKVPGEIVGADTFSDIAVVKISS
EKVTTVAEFGDSSKLTVGETAIAIGSPLGSEYANTVTQGIVSSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKIATNGGTSVEGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVV
VRSIQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLDKSSGDLES

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=42049 SPPN_RS11310 WP_000681604.1 2188522..2189703(+) (htrA) [Streptococcus pseudopneumoniae IS7493]
ATGAAACATCTAAAAACATTTTACAAAAAATGGTTTCAATTATTAGTCGTTATCGTCATTAGCTTTTTTAGTGGAGCCTT
GGGTAGTTTTTCAATAACTCAACTAACTCAAAAAAGTAGTGTAAACAACTCTAACAACAATAGTACTATTACACAAACTG
CCTATAAGAACGAAAATTCAACAACACAGGCTGTTAATAAAGTAAAAGATGCCGTTGTATCCGTTATTACTTATTCAGCA
AATAGACAAAATAGCGTATTTGGCAATGATGAGACTGATACAGATTCTCAGCAAATCTCTAGTGAGGGATCTGGCGTTAT
TTATAAAAAGAATGATAAAGAAGCTTACATCGTCACCAACAATCACGTTATAAATGGCGCTAGCAAAGTAGATATTCGAT
TATCAGATGGGACTAAAGTACCTGGAGAAATTGTCGGAGCGGATACTTTCTCTGATATTGCTGTCGTCAAAATCTCTTCA
GAAAAAGTGACAACAGTAGCTGAGTTTGGTGATTCTAGCAAGTTAACCGTAGGAGAAACTGCTATTGCCATTGGTAGTCC
GTTAGGTTCTGAATATGCAAATACTGTCACTCAAGGTATCGTATCTAGTCTTAATCGAAATGTATCTTTAAAATCTGAAG
ATGGACAAGCCATTTCTACAAAAGCCATCCAAACTGATACTGCTATTAATCCAGGTAACTCTGGTGGCCCACTGATCAAT
ATCCAAGGACAGGTTATCGGAATTACCTCAAGTAAAATTGCCACAAATGGAGGAACATCTGTAGAAGGTCTTGGTTTTGC
AATCCCTGCAAATGATGCTATCAATATTATTGAACAGTTAGAAAAAAACGGAAAAGTGACGCGTCCAGCTTTGGGAATCC
AGATGGTTAATTTATCTAATGTGAGTACAAGCGACATCAGAAGACTCAATATTCCAAGTAATGTTACATCTGGTGTAGTT
GTTCGTTCGATACAAAGTAATATGCCTGCCAATGGTCACCTTGAAAAATACGATGTAATTACAAAAGTAGATGACAAAGA
GATTGCTTCATCAACAGACTTACAAAGTGCTCTTTACAATCATTCTATCGGAGACACCATTAAGATCACTTACTATCGCA
ACGGTAAAGAAGAAACTACATCTATTAAACTTGACAAGAGTTCAGGTGATTTAGAATCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus pneumoniae Rx1

98.728

100

0.987

  htrA Streptococcus pneumoniae D39

98.728

100

0.987

  htrA Streptococcus pneumoniae R6

98.728

100

0.987

  htrA Streptococcus pneumoniae TIGR4

98.728

100

0.987

  htrA Streptococcus mitis NCTC 12261

97.455

100

0.975

  htrA Streptococcus gordonii str. Challis substr. CH1

66.919

100

0.674

  htrA Streptococcus mutans UA159

54.822

100

0.55


Multiple sequence alignment