Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HYC88_RS25420 Genome accession   NZ_CP061072
Coordinates   5918892..5920820 (-) Length   642 a.a.
NCBI ID   WP_073801525.1    Uniprot ID   -
Organism   Streptomyces sp. CB00271     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5913892..5925820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYC88_RS25405 (HYC88_25405) - 5914306..5915565 (+) 1260 WP_073801522.1 NAD(P)/FAD-dependent oxidoreductase -
  HYC88_RS25410 (HYC88_25410) dnaG 5915659..5917581 (+) 1923 WP_073801523.1 DNA primase -
  HYC88_RS25415 (HYC88_25415) rpoS 5917787..5918878 (+) 1092 WP_073801524.1 RNA polymerase sigma factor Regulator
  HYC88_RS25420 (HYC88_25420) rcrQ 5918892..5920820 (-) 1929 WP_073801525.1 ABC transporter ATP-binding protein Regulator
  HYC88_RS25425 (HYC88_25425) rcrP 5920820..5922553 (-) 1734 WP_073801526.1 ABC transporter ATP-binding protein Regulator
  HYC88_RS25430 (HYC88_25430) - 5922756..5924207 (-) 1452 WP_073801527.1 FGGY family carbohydrate kinase -
  HYC88_RS25435 (HYC88_25435) - 5924451..5924756 (-) 306 WP_073801528.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69133.38 Da        Isoelectric Point: 5.2217

>NTDB_id=419916 HYC88_RS25420 WP_073801525.1 5918892..5920820(-) (rcrQ) [Streptomyces sp. CB00271]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFGREKTSLYLMLAAVTASVAFSVAGPKILGKATDLIFAGVVGRGMPDGT
TKAQAIEGLREKGSGSMADMLSGVDFTPGEGIDFGAVGNVLLLALAIYAGAGLLLLAATRLSIRVINRIVFQLREDLQTK
LARLPLSYFDRSKRGEVLSRATNDIDNISQTLQQTLGQLINSLLTIVGVLVVMFWISPLLALVALVTVPLSVVVATQVGK
RSQPQFVQQWRVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYEAGFKAQFASGVMQPLMFFISNINYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFELLDAEEQEADPEHGERPERLEGRVSLE
KVAFRYDPEKPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDDLRSSIGMVLQDT
WLFGGTIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDSVIDDDGAGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEALLAAKGAYARLYAAQFAQALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=419916 HYC88_RS25420 WP_073801525.1 5918892..5920820(-) (rcrQ) [Streptomyces sp. CB00271]
ATGGCCGGTCCGGGCGGACGGATGATGGCCGGCGGCGCGCCCACCGACCGGTCGATGGATTTCAAGGGGTCGAGCAAGCG
GCTGCTGAAGCGGTTCGGCCGGGAGAAGACCTCGCTGTACCTGATGCTGGCGGCGGTGACGGCGAGCGTCGCCTTCTCGG
TGGCGGGTCCGAAGATCCTCGGGAAGGCGACCGACCTGATCTTCGCGGGTGTGGTCGGGCGCGGAATGCCCGACGGCACG
ACGAAGGCGCAGGCGATCGAGGGGCTGCGCGAGAAGGGCAGCGGCTCCATGGCCGACATGCTCTCGGGGGTGGACTTCAC
CCCGGGCGAGGGCATCGACTTCGGGGCGGTGGGGAACGTCCTGCTGCTGGCCCTGGCGATCTACGCCGGGGCCGGGCTGC
TGCTGCTGGCGGCGACGCGGCTGTCGATCCGGGTGATCAACCGGATCGTGTTCCAGTTGCGCGAAGACCTCCAGACGAAG
CTGGCGCGGCTGCCGCTCTCGTACTTCGACCGGTCCAAGCGCGGTGAGGTGCTGAGCCGGGCGACGAACGACATCGACAA
CATCTCGCAGACGCTCCAGCAGACCTTGGGGCAGTTGATCAACTCCCTGCTGACGATCGTCGGCGTGCTGGTCGTGATGT
TCTGGATCTCGCCGCTGCTGGCCCTGGTCGCGCTGGTGACGGTCCCGTTGTCGGTGGTCGTGGCGACGCAGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGGGTGACGGGGAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCGCTGTACGAGGCGG
GGTTCAAGGCCCAGTTCGCCAGCGGGGTCATGCAGCCGCTGATGTTCTTCATCTCGAACATCAACTATGTGCTGGTCGCG
GTGGTCGGCGGGCTCAGGGTCGCCTCGGGCACGCTGTCGATCGGTGATGTGCAGGCGTTCATCCAGTATTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGCATCGCTTCGGCGGAGCGGGTCTTCGAGC
TGCTGGACGCCGAGGAGCAGGAAGCGGACCCGGAGCACGGCGAGCGCCCGGAGCGGTTGGAGGGCCGGGTCTCGCTGGAG
AAGGTGGCCTTCCGCTACGACCCGGAGAAGCCGCTGATCGAGGATCTGTCGCTGAGTGTGGAGCCGGGGCAGACCGTCGC
GATCGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAATCTCCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGA
TCGCGCTCGACGGGGTCGACGTGGCGAAGATGTCCCGGGACGATCTGCGGTCCTCCATAGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACGATCGCGGAGAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGC
GGCCCGGGCGGCGCACGCGGACCGGTTCGTCCGGACGCTGCCCGACGGGTACGACTCGGTGATCGACGACGACGGCGCCG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCCTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCGACCAGCTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCCCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTCGAGCAGG
GCACGCACGAGGCGCTGCTGGCGGCCAAGGGTGCCTATGCGCGGCTGTACGCGGCCCAGTTCGCCCAGGCGTTGGCGGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.612

82.399

0.368

Multiple sequence alignment