Detailed information NTG0419915

Bioinformatically predicted

Overview

• Name: comGB
• Type: Machinery gene
• Locus tag: GSF71_RS02175
• Genome accession: NZ_CP048116
• Coordinates: 444239..445246 (-)
• Length: 335 a.a.
• NCBI ID: WP_076648212.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain MBEL1397
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 439239..450246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSF71_RS02135	-	439574..440032 (-)	459	WP_025016390.1	hypothetical protein	-
GSF71_RS02140	-	440087..441283 (-)	1197	WP_025016389.1	acetate/propionate family kinase	-
GSF71_RS02145	-	441305..442315 (-)	1011	WP_025016388.1	class I SAM-dependent methyltransferase	-
GSF71_RS02150	-	442439..442777 (-)	339	WP_056947123.1	hypothetical protein	-
GSF71_RS02155	comGF	442740..443252 (-)	513	WP_025016386.1	competence type IV pilus minor pilin ComGF	Machinery gene
GSF71_RS02160	comGE	443227..443532 (-)	306	WP_025016385.1	hypothetical protein	Machinery gene
GSF71_RS02165	comGD	443519..443971 (-)	453	WP_076648209.1	competence type IV pilus minor pilin ComGD	Machinery gene
GSF71_RS02170	comGC	443943..444242 (-)	300	WP_076645268.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
GSF71_RS02175	comGB	444239..445246 (-)	1008	WP_076648212.1	type II secretion system F family protein	Machinery gene
GSF71_RS02180	comGA	445239..446129 (-)	891	WP_076648214.1	competence type IV pilus ATPase ComGA	Machinery gene
GSF71_RS02185	-	446244..446975 (-)	732	WP_011375002.1	YebC/PmpR family DNA-binding transcriptional regulator	-
GSF71_RS02190	-	447066..447566 (-)	501	WP_016265379.1	VanZ family protein	-
GSF71_RS02195	-	447663..448037 (+)	375	WP_076648217.1	hypothetical protein	-
GSF71_RS02205	-	448224..449624 (-)	1401	WP_025016379.1	hypothetical protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38444.37 Da
• Isoelectric Point: 9.2248

>NTDB_id=419915 GSF71_RS02175 WP_076648212.1 444239..445246(-) (comGB) [Latilactobacillus sakei strain MBEL1397]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNHVILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS

Nucleotide

• Length: 1008 bp

>NTDB_id=419915 GSF71_RS02175 WP_076648212.1 444239..445246(-) (comGB) [Latilactobacillus sakei strain MBEL1397]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATTCGGCAAAAGCGGCGCCGAGAAATTCG
GGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCACGTCATATTGTGGGGCTTTTTGTTAGTG
CTGGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (14-133)

• Type II secretion system (T2SS), protein F (T2SSF) (207-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGB	Latilactobacillus sakei subsp. sakei 23K	98.507	100	0.985