Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   HYC88_RS25415 Genome accession   NZ_CP061072
Coordinates   5917787..5918878 (+) Length   363 a.a.
NCBI ID   WP_073801524.1    Uniprot ID   -
Organism   Streptomyces sp. CB00271     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5912787..5923878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYC88_RS25400 (HYC88_25400) - 5912832..5914181 (+) 1350 WP_073801521.1 deoxyguanosinetriphosphate triphosphohydrolase -
  HYC88_RS25405 (HYC88_25405) - 5914306..5915565 (+) 1260 WP_073801522.1 NAD(P)/FAD-dependent oxidoreductase -
  HYC88_RS25410 (HYC88_25410) dnaG 5915659..5917581 (+) 1923 WP_073801523.1 DNA primase -
  HYC88_RS25415 (HYC88_25415) rpoS 5917787..5918878 (+) 1092 WP_073801524.1 RNA polymerase sigma factor Regulator
  HYC88_RS25420 (HYC88_25420) rcrQ 5918892..5920820 (-) 1929 WP_073801525.1 ABC transporter ATP-binding protein Regulator
  HYC88_RS25425 (HYC88_25425) rcrP 5920820..5922553 (-) 1734 WP_073801526.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 40602.15 Da        Isoelectric Point: 5.7528

>NTDB_id=419915 HYC88_RS25415 WP_073801524.1 5917787..5918878(+) (rpoS) [Streptomyces sp. CB00271]
MQTRTVTTTTEPIAAIPAQNRSLHHPETTAGPPGYAPEAVMVEATHLPDPPEPRNRADSGGPTSDLFRQYLREIGRITLL
TAAEEVELARRVEAGLFAEERLAGTPDLDSRLAGDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPSAEDVAGELDL
TPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLEDGR
PRTLEEIGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=419915 HYC88_RS25415 WP_073801524.1 5917787..5918878(+) (rpoS) [Streptomyces sp. CB00271]
GTGCAGACCCGGACCGTGACGACCACGACCGAGCCCATCGCGGCCATCCCGGCGCAGAACAGGTCGCTGCACCACCCGGA
GACCACAGCCGGCCCGCCCGGATACGCACCCGAGGCAGTCATGGTGGAAGCGACGCACCTCCCCGACCCTCCGGAGCCGA
GGAACCGGGCGGACTCCGGCGGCCCCACCTCCGACCTGTTCCGGCAGTACCTGCGCGAGATCGGCCGCATCACGCTGCTC
ACCGCCGCCGAGGAGGTCGAGCTCGCCCGCCGCGTCGAGGCCGGGCTCTTCGCCGAGGAACGCCTCGCGGGCACCCCCGA
CCTCGACTCCCGCCTCGCCGGGGACCTGGACCGGCTGGTGGTGATGGGCCGCACGGCCAAACGCCGCCTCATCGAGGCCA
ACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGCTACGTGGGCCGCGGGCTGACCATGCTCGACCTGGTCCAGGAGGGGAAC
CTCGGTCTGATCCGGGCCGTGGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCGACCTGGTGGATCCG
GCAGGCCATGTCCCGCGCGCTGGCCGACCAGGCCCGCACCATCCGCGTCCCGGTCCATGTCGTGGAACTGATCAACCGCG
TGGTGCGGGTCCAGCGCCGGCTGCTCCAGGAACGCGGCGTCGAGCCCAGCGCCGAGGACGTCGCCGGCGAGCTCGACCTG
ACGCCCGAGCGGGTCACCGAAGTCCTCCGCCTGGCCCAGGAGCCCGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGA
CGTCTCCTTCGGCGACCTCATCGAGGACGGCGACGCCGCGTCGCCCGTCGAGTCCGCCGCCTTCCTCCTGCTGCGCGAAC
ACCTGGAGGCGGTGCTCTCCACCCTCGGCGAGCGCGAACGCAAGGTCGTCCAACTGCGGTACGGCCTGGAGGACGGGCGG
CCCCGCACCCTGGAGGAGATAGGCCGGATCTTCGGCGTGACGCGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCAG
CAGGCTGCGGGACCACGCCTTCGCCGACCAACTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(209-285)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(65-98)

Sigma-70, region 4 (Sigma70_r4)

(298-350)

Sigma-70 region 2 (Sigma70_r2)

(130-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.634

95.592

0.388

Multiple sequence alignment