Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FX986_RS13080 Genome accession   NZ_CP047970
Coordinates   3112186..3113424 (-) Length   412 a.a.
NCBI ID   WP_191236639.1    Uniprot ID   -
Organism   Cobetia marina strain GPM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3107186..3118424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX986_RS13055 argJ 3107928..3109151 (+) 1224 WP_084209208.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  FX986_RS13060 - 3109260..3110213 (+) 954 WP_077371708.1 Nudix family hydrolase -
  FX986_RS13065 yacG 3110342..3110587 (-) 246 WP_191236637.1 DNA gyrase inhibitor YacG -
  FX986_RS13070 coaE 3110580..3111227 (-) 648 WP_191236638.1 dephospho-CoA kinase -
  FX986_RS13075 pilD 3111227..3112087 (-) 861 WP_254696420.1 prepilin peptidase Machinery gene
  FX986_RS13080 pilC 3112186..3113424 (-) 1239 WP_191236639.1 type II secretion system F family protein Machinery gene
  FX986_RS13085 pilB 3113669..3115405 (-) 1737 WP_191236640.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FX986_RS13090 - 3116167..3116646 (+) 480 WP_191236641.1 pilin -
  FX986_RS13095 - 3116694..3116996 (-) 303 WP_191236642.1 hypothetical protein -
  FX986_RS13100 - 3117121..3118401 (-) 1281 WP_191236643.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44797.40 Da        Isoelectric Point: 9.9124

>NTDB_id=418851 FX986_RS13080 WP_191236639.1 3112186..3113424(-) (pilC) [Cobetia marina strain GPM2]
MATIRTAKKDKKKAGIETWQWTGKNSRGEKVKGELMSANVDQVKNTLVGQGIVVKRLRKKSALFGGSKKVSGKDVTMFAR
QMATMIRAGVPVLQAFGIVAESMKSPGMRHLVEDLMNQVGAGASFSEALRKHPQHFDNLFTNLVAAGEQAGALDKMLDRV
ATYKEKIDSLKARVKKALYYPAAVICVGFGVTAILLIKVVPQFETLFNGFGAELPAFTQLTITMSEYAQAYWYIGLGAVV
LTAFLIAQGMKRSDKFAYAMHRFMLKVPVLGDILDKSSVARYSRTLATTFQAGVPLIESLDTAAGATGSKVYERAIAQIK
EDVSTGQQLNFAMRNTQLFPTLAVQMVAIGEESGALDAMLNKVADFYEEDVDNKVDALTSLLEPLIIVVLGTLVGGLVVS
MYLPIFEMGNVI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=418851 FX986_RS13080 WP_191236639.1 3112186..3113424(-) (pilC) [Cobetia marina strain GPM2]
ATGGCGACGATCAGAACTGCCAAGAAAGACAAGAAGAAGGCGGGCATAGAAACCTGGCAATGGACGGGCAAGAATTCGCG
TGGTGAAAAGGTCAAGGGCGAGTTGATGTCCGCCAATGTCGACCAAGTGAAGAATACGCTGGTCGGCCAGGGTATCGTCG
TCAAGCGTTTGCGCAAGAAATCCGCCCTGTTTGGTGGCAGCAAGAAAGTCAGCGGCAAGGATGTCACCATGTTTGCCCGC
CAGATGGCAACGATGATTCGCGCCGGTGTCCCCGTTCTGCAAGCCTTCGGTATCGTCGCCGAGAGCATGAAAAGCCCGGG
CATGCGCCACCTGGTGGAAGATCTGATGAACCAGGTCGGCGCGGGCGCCAGCTTCTCGGAAGCGCTGCGCAAGCACCCAC
AACATTTCGATAATCTATTTACCAACCTGGTTGCCGCTGGCGAACAGGCCGGTGCCCTCGACAAGATGCTGGACCGCGTC
GCGACTTACAAAGAGAAGATCGATTCCTTGAAAGCGCGTGTAAAAAAGGCGCTGTATTACCCTGCGGCCGTCATATGCGT
AGGGTTTGGGGTCACCGCCATACTATTGATCAAGGTTGTCCCTCAATTCGAAACCTTATTCAATGGATTTGGGGCTGAGT
TACCCGCTTTCACTCAACTGACCATCACCATGTCCGAGTACGCGCAAGCTTATTGGTATATTGGTCTTGGCGCGGTAGTA
CTAACTGCTTTTCTTATCGCCCAGGGTATGAAGCGATCAGACAAATTCGCCTATGCCATGCACCGCTTCATGCTGAAAGT
ACCAGTGCTGGGTGACATACTTGACAAGTCTTCGGTAGCACGATACTCACGTACCCTCGCCACCACCTTTCAGGCTGGCG
TACCCTTGATAGAATCTCTGGATACTGCTGCCGGCGCGACGGGCAGCAAGGTCTATGAGCGCGCTATCGCCCAGATCAAG
GAAGATGTCTCCACAGGCCAGCAGCTCAACTTTGCCATGCGCAATACTCAGCTGTTTCCCACACTGGCGGTGCAGATGGT
GGCTATAGGGGAAGAGTCAGGTGCCTTGGATGCCATGCTCAACAAGGTCGCCGACTTCTATGAAGAAGATGTCGACAACA
AGGTCGATGCCCTGACCTCACTGCTGGAACCCTTGATCATCGTGGTATTGGGTACCTTGGTCGGTGGCTTGGTAGTTTCC
ATGTACCTACCAATATTCGAAATGGGCAATGTAATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(283-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.722

95.874

0.553
  pilC Acinetobacter baylyi ADP1

54.3

98.786

0.536
  pilC Acinetobacter baumannii D1279779

53.563

98.786

0.529
  pilC Legionella pneumophila strain ERS1305867

52.088

98.786

0.515
  pilC Vibrio campbellii strain DS40M4

45.025

97.573

0.439
  pilC Vibrio cholerae strain A1552

43.86

96.845

0.425
  pilG Neisseria meningitidis 44/76-A

40.976

99.515

0.408
  pilG Neisseria gonorrhoeae MS11

40.976

99.515

0.408

Multiple sequence alignment