Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PSTAB_RS04805 Genome accession   NC_015740
Coordinates   1025791..1027008 (+) Length   405 a.a.
NCBI ID   WP_013981943.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1020791..1032008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSTAB_RS21085 - 1021039..1021593 (-) 555 WP_080564968.1 REP-associated tyrosine transposase -
  PSTAB_RS21505 - 1022846..1023187 (-) 342 WP_148263409.1 hypothetical protein -
  PSTAB_RS21090 - 1023297..1023776 (-) 480 WP_041771654.1 pilin -
  PSTAB_RS04800 (PSTAB_0957) pilB 1024086..1025789 (+) 1704 WP_013981942.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PSTAB_RS04805 (PSTAB_0958) pilC 1025791..1027008 (+) 1218 WP_013981943.1 type II secretion system F family protein Machinery gene
  PSTAB_RS04810 (PSTAB_0959) pilD 1027011..1027880 (+) 870 WP_013981944.1 prepilin peptidase Machinery gene
  PSTAB_RS21095 (PSTAB_0960) coaE 1028011..1028619 (+) 609 WP_013981945.1 dephospho-CoA kinase -
  PSTAB_RS04820 yacG 1028616..1028813 (+) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  PSTAB_RS04825 (PSTAB_0961) - 1028826..1029506 (-) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  PSTAB_RS04830 (PSTAB_0962) - 1029563..1030603 (-) 1041 WP_013981947.1 NADP(H)-dependent aldo-keto reductase -
  PSTAB_RS04835 (PSTAB_0963) rplM 1031023..1031451 (+) 429 WP_003287302.1 50S ribosomal protein L13 -
  PSTAB_RS04840 (PSTAB_0964) rpsI 1031467..1031859 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43905.60 Da        Isoelectric Point: 9.9279

>NTDB_id=41741 PSTAB_RS04805 WP_013981943.1 1025791..1027008(+) (pilC) [Stutzerimonas stutzeri]
MAQKAIKTSVFTWEGTNKQGAKIKGELSGVSPAMVKAQLRKQGVNPQKVRKKSASLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQDVFANFGAELPAFTLFVIGISEALQAWWHLVLLALVGAAYAFK
TAHGKSERFRNSFDRFLLKMPIVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNATLKVKSDVSSGM
QLNFSMRTTGTFPSMAIQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=41741 PSTAB_RS04805 WP_013981943.1 1025791..1027008(+) (pilC) [Stutzerimonas stutzeri]
ATGGCGCAGAAAGCGATAAAAACCAGCGTGTTCACCTGGGAAGGCACCAACAAGCAGGGCGCGAAGATAAAGGGCGAGCT
CAGCGGCGTGAGCCCGGCGATGGTCAAGGCCCAGCTGCGCAAGCAGGGTGTTAACCCTCAGAAGGTGCGCAAGAAGTCGG
CCTCGTTGTTCAGTGCTGGCAAAAAGATCAAGCCGATGGACATCGCCCTCTTCACTCGCCAGATGGCAACCATGATGAAA
GCAGGTGTGCCGCTATTGCAGTCCTTCGACATCATCGGTGAGGGCTTTGACAATCCGAATATGCGCAAACTGGTGGATGA
TCTGAAACAGGAGGTCGCCGCGGGTAATAGCTTCGCAACCGCACTGCGCAAGAAGCCTCAATACTTCGATGATCTCTATT
GCAATCTGGTTGACTCAGGCGAGCAGTCCGGTTCGCTAGAAACGCTGCTTGATCGGGTGGCAACCTACAAGGAAAAGACC
GAGGCCCTGAAGGCCAAGATCAAGAAGGCGATGAATTACCCCATTGCCGTGGTGCTGGTTGCAATCATCGTTTCGGCGAT
TCTGCTGATCAAGGTGGTTCCACAGTTTCAGGATGTATTCGCGAACTTCGGTGCAGAGCTTCCGGCATTCACATTGTTTG
TGATTGGCATATCCGAAGCGCTTCAGGCTTGGTGGCATCTGGTTTTGCTGGCGTTGGTCGGTGCTGCCTATGCCTTCAAG
ACTGCTCACGGCAAGTCCGAGCGCTTTCGTAACTCGTTTGACAGGTTTCTTCTTAAAATGCCGATTGTCGGAGATATTCT
CTATAAATCTGCTGTTGCGCGTTTTGCTCGCACCTTAGCTACGACCTTTGCCGCAGGCGTGCCGTTAGTGGACGCGTTAG
ATTCAGTTGCGGGCGCGACAGGTAACGTGGTTTTCCGTAACGCCACGCTGAAGGTAAAGAGCGATGTTTCTAGCGGTATG
CAGCTGAACTTCTCCATGCGCACGACGGGTACTTTTCCGAGCATGGCGATCCAGATGACTGCCATTGGCGAGGAATCCGG
CTCGCTGGATGAAATGCTAGCTAAGGTCGCGACCTTCTATGAAGACGAAGTTGACAATATGGTCGACGGGCTGACTGCCC
TGATGGAGCCAATGATCATGGCGGTGCTTGGCGTGCTGGTCGGCGGTTTGATCATTGCCATGTACCTGCCGATTTTCCAA
CTGGGCGCTGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

90.864

100

0.909
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Acinetobacter baumannii D1279779

58.272

100

0.583
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilG Neisseria gonorrhoeae MS11

46.154

99.506

0.459
  pilG Neisseria meningitidis 44/76-A

45.522

99.259

0.452
  pilC Vibrio cholerae strain A1552

42.677

97.778

0.417
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402
  pilC Thermus thermophilus HB27

36.658

99.012

0.363

Multiple sequence alignment