Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NIT79A3_RS00655 Genome accession   NC_015731
Coordinates   156225..157448 (+) Length   407 a.a.
NCBI ID   WP_013964342.1    Uniprot ID   F8GFD9
Organism   Nitrosomonas sp. Is79A3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151225..162448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIT79A3_RS00635 (Nit79A3_0128) - 151921..152715 (+) 795 WP_013964338.1 uroporphyrinogen-III synthase -
  NIT79A3_RS00640 (Nit79A3_0129) - 152858..154033 (+) 1176 WP_013964339.1 heme biosynthesis HemY N-terminal domain-containing protein -
  NIT79A3_RS00645 (Nit79A3_0130) - 154039..155094 (-) 1056 WP_013964340.1 CDP-6-deoxy-delta-3,4-glucoseen reductase -
  NIT79A3_RS00650 (Nit79A3_0131) - 155142..156038 (+) 897 WP_013964341.1 SDR family oxidoreductase -
  NIT79A3_RS00655 (Nit79A3_0132) pilC 156225..157448 (+) 1224 WP_013964342.1 type II secretion system F family protein Machinery gene
  NIT79A3_RS00660 (Nit79A3_0133) pilD 157487..158347 (+) 861 WP_041360430.1 A24 family peptidase Machinery gene
  NIT79A3_RS00665 (Nit79A3_0134) coaE 158351..158971 (+) 621 WP_013964344.1 dephospho-CoA kinase -
  NIT79A3_RS00670 (Nit79A3_0135) zapD 159073..159828 (+) 756 WP_013964345.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44385.30 Da        Isoelectric Point: 9.6634

>NTDB_id=41635 NIT79A3_RS00655 WP_013964342.1 156225..157448(+) (pilC) [Nitrosomonas sp. Is79A3]
MATVTAHTENKIKEINYSWEGKDRAGKQIKGEMRAAGTVIVTSTLRRQGIKVTKIKKTQAGGKITDKDITLFTRQLATMM
KSGVPLLQAFDIVGRGHSNRALSKLLLDIKADVETGSNLTDAFRKYPLYFDALYCNLVGAGEAAGILDHILDRLATYKEK
IQAIKGKIKSALFYPISIIVVAFVITAVIMIFVIPAFKDLFEGFGAELPAPTLLVMTISNFFVAYWWAILGVLGGGIYAF
LYTWKRSISMQRVMDRFALKLPIFGEVIRKATIARWSRTLSTMFAAGVPLVESLDSVAGAAGNHIYFEATKNIQIEVSTG
NSLTSSMAGTNVFPNMVIQMVAIGEEAGSLDSMLSKIADFYEAEVDDAVAALSSLMEPIIMVVLGTLIGGMVIAMYLPIF
KMGMVVN

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=41635 NIT79A3_RS00655 WP_013964342.1 156225..157448(+) (pilC) [Nitrosomonas sp. Is79A3]
ATGGCAACTGTGACAGCGCACACAGAAAATAAAATAAAAGAAATTAATTATTCGTGGGAAGGAAAGGACCGAGCTGGTAA
ACAGATAAAAGGTGAAATGCGCGCTGCTGGGACAGTCATTGTTACTTCTACGTTACGCCGCCAGGGTATCAAAGTTACAA
AAATAAAGAAAACTCAGGCTGGTGGCAAAATTACTGATAAGGATATTACGTTATTTACCCGTCAGCTGGCTACCATGATG
AAATCTGGTGTCCCGCTGCTACAAGCCTTCGATATAGTGGGCAGAGGGCACAGCAACCGAGCCTTGAGTAAACTACTATT
GGATATTAAAGCCGATGTAGAAACTGGTAGTAATTTGACAGATGCATTTCGCAAATACCCACTTTACTTCGATGCATTAT
ATTGTAATCTAGTGGGAGCGGGAGAAGCTGCCGGTATTCTGGACCATATTTTAGATCGTTTAGCAACCTACAAAGAAAAA
ATTCAAGCCATCAAGGGAAAAATTAAATCAGCACTTTTTTACCCTATTTCGATTATCGTGGTTGCTTTTGTTATTACTGC
GGTCATCATGATTTTTGTAATCCCTGCCTTTAAAGATCTATTCGAAGGATTTGGCGCTGAATTGCCCGCGCCAACGCTTC
TTGTAATGACCATTTCAAATTTCTTCGTCGCTTATTGGTGGGCCATTTTAGGTGTTCTGGGTGGTGGAATTTATGCTTTT
TTGTATACTTGGAAGCGTTCGATCTCAATGCAACGTGTTATGGATCGTTTTGCACTTAAGCTGCCTATCTTCGGAGAAGT
AATTCGTAAAGCCACGATTGCACGCTGGTCGCGTACGCTTTCAACTATGTTTGCTGCAGGTGTTCCTCTGGTAGAGTCAT
TGGATTCTGTGGCGGGTGCGGCAGGGAATCATATTTATTTTGAAGCCACAAAGAACATACAAATTGAAGTCAGTACAGGC
AATAGTTTGACGTCTTCTATGGCCGGCACCAATGTATTTCCGAATATGGTGATTCAAATGGTCGCCATCGGTGAAGAGGC
CGGTTCACTTGATTCCATGTTAAGTAAAATTGCTGATTTCTACGAAGCAGAAGTCGATGATGCAGTTGCTGCACTGTCAA
GCTTGATGGAACCCATCATCATGGTTGTATTGGGAACACTAATTGGTGGTATGGTTATTGCTATGTATTTGCCCATCTTT
AAAATGGGTATGGTTGTTAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F8GFD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.208

99.263

0.538
  pilG Neisseria gonorrhoeae MS11

53.904

97.543

0.526
  pilG Neisseria meningitidis 44/76-A

53.652

97.543

0.523
  pilC Pseudomonas stutzeri DSM 10701

51.861

99.017

0.514
  pilC Acinetobacter baumannii D1279779

51.889

97.543

0.506
  pilC Acinetobacter baylyi ADP1

50.882

97.543

0.496
  pilC Vibrio cholerae strain A1552

40.863

96.806

0.396
  pilC Vibrio campbellii strain DS40M4

38.847

98.034

0.381
  pilC Thermus thermophilus HB27

38.596

98.034

0.378

Multiple sequence alignment