Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NIT79A3_RS00660 Genome accession   NC_015731
Coordinates   157487..158347 (+) Length   286 a.a.
NCBI ID   WP_041360430.1    Uniprot ID   -
Organism   Nitrosomonas sp. Is79A3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152487..163347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIT79A3_RS00640 (Nit79A3_0129) - 152858..154033 (+) 1176 WP_013964339.1 heme biosynthesis HemY N-terminal domain-containing protein -
  NIT79A3_RS00645 (Nit79A3_0130) - 154039..155094 (-) 1056 WP_013964340.1 CDP-6-deoxy-delta-3,4-glucoseen reductase -
  NIT79A3_RS00650 (Nit79A3_0131) - 155142..156038 (+) 897 WP_013964341.1 SDR family oxidoreductase -
  NIT79A3_RS00655 (Nit79A3_0132) pilC 156225..157448 (+) 1224 WP_013964342.1 type II secretion system F family protein Machinery gene
  NIT79A3_RS00660 (Nit79A3_0133) pilD 157487..158347 (+) 861 WP_041360430.1 A24 family peptidase Machinery gene
  NIT79A3_RS00665 (Nit79A3_0134) coaE 158351..158971 (+) 621 WP_013964344.1 dephospho-CoA kinase -
  NIT79A3_RS00670 (Nit79A3_0135) zapD 159073..159828 (+) 756 WP_013964345.1 cell division protein ZapD -
  NIT79A3_RS00675 (Nit79A3_0136) cphA 160018..162591 (-) 2574 WP_013964346.1 cyanophycin synthetase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31771.90 Da        Isoelectric Point: 7.9650

>NTDB_id=41636 NIT79A3_RS00660 WP_041360430.1 157487..158347(+) (pilD) [Nitrosomonas sp. Is79A3]
MPLLSMLQDMPAFFVSFVAIIGLMIGSFLNVVIYRLPEMMKRNWLQQCAELHGEANKALPTFNLITPRSECIHCKHKITA
WENIPIVSYLFLHGRCSQCHARISLRYPIVEAVTALLSGFVAWYYGYGVITIAVLIFVWALITLAVIDLNTQLLPDDITL
PLLWVGLLVNMNNGFTDIQSAVIGAVAGYLSLWSIYWCFKLLTGKEGMGYGDFKLLSAIGAWLGWSMLPLVILFSSLVGA
IAGIGLMLAARLNKNIPIPFGPYLVGGAFIALFWGEKLNHSYYGLF

Nucleotide


Download         Length: 861 bp        

>NTDB_id=41636 NIT79A3_RS00660 WP_041360430.1 157487..158347(+) (pilD) [Nitrosomonas sp. Is79A3]
ATGCCATTACTATCCATGCTGCAAGATATGCCTGCTTTCTTTGTTTCATTTGTCGCAATAATCGGATTAATGATCGGCAG
TTTTCTAAACGTAGTGATATATCGTCTGCCTGAAATGATGAAAAGAAATTGGCTGCAGCAATGCGCGGAGCTGCATGGTG
AAGCGAACAAAGCATTGCCAACATTTAACTTGATTACCCCGCGTTCAGAATGTATCCATTGCAAACATAAAATAACCGCA
TGGGAAAATATTCCTATTGTTAGCTATCTTTTTCTACATGGGCGTTGCTCTCAGTGTCATGCAAGGATTTCACTGCGTTA
TCCTATTGTAGAAGCAGTAACAGCCCTTCTGAGCGGTTTTGTTGCCTGGTACTATGGTTATGGTGTGATAACCATTGCGG
TATTGATTTTTGTGTGGGCACTCATAACCCTTGCTGTCATTGATTTGAATACGCAATTGCTGCCGGATGATATAACGTTA
CCACTATTATGGGTGGGCTTACTGGTTAATATGAACAACGGTTTTACTGATATTCAATCTGCGGTTATTGGCGCTGTAGC
AGGCTATCTTTCCTTGTGGTCAATTTACTGGTGCTTTAAACTTCTAACGGGTAAAGAAGGTATGGGCTATGGCGATTTTA
AATTGCTGTCTGCCATTGGCGCGTGGCTTGGTTGGAGCATGCTTCCGCTGGTCATTCTGTTTTCATCGCTGGTGGGTGCG
ATTGCCGGTATTGGGTTAATGTTAGCAGCTAGACTCAATAAGAACATTCCCATTCCATTCGGTCCTTATCTGGTTGGCGG
GGCATTTATTGCTCTATTTTGGGGAGAAAAGCTAAATCATTCTTATTATGGTTTATTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

49.819

96.853

0.483
  pilD Neisseria gonorrhoeae MS11

49.632

95.105

0.472
  pilD Vibrio campbellii strain DS40M4

47.35

98.951

0.469
  pilD Acinetobacter baumannii D1279779

45

97.902

0.441
  pilD Acinetobacter nosocomialis M2

45

97.902

0.441

Multiple sequence alignment