Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GT347_RS09170 Genome accession   NZ_CP047650
Coordinates   1996880..1998097 (+) Length   405 a.a.
NCBI ID   WP_160551661.1    Uniprot ID   A0A857J2J5
Organism   Xylophilus rhododendri strain KACC 21265     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1991880..2003097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT347_RS09145 (GT347_09145) - 1992077..1993060 (+) 984 WP_160551656.1 ABC transporter substrate-binding protein -
  GT347_RS09150 (GT347_09150) - 1993076..1993792 (+) 717 WP_160551657.1 MgtC/SapB family protein -
  GT347_RS09155 (GT347_09155) - 1993894..1994292 (+) 399 WP_160551658.1 virulence factor -
  GT347_RS09160 (GT347_09160) - 1994302..1994799 (-) 498 WP_160551659.1 Spy/CpxP family protein refolding chaperone -
  GT347_RS09165 (GT347_09165) pilB 1995094..1996836 (+) 1743 WP_160551660.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GT347_RS09170 (GT347_09170) pilC 1996880..1998097 (+) 1218 WP_160551661.1 type II secretion system F family protein Machinery gene
  GT347_RS09175 (GT347_09175) - 1998148..1999023 (-) 876 WP_160551662.1 Gfo/Idh/MocA family protein -
  GT347_RS09180 (GT347_09180) - 1999181..2000059 (+) 879 WP_195812407.1 A24 family peptidase -
  GT347_RS09185 (GT347_09185) coaE 2000076..2000675 (+) 600 WP_160551663.1 dephospho-CoA kinase -
  GT347_RS09190 (GT347_09190) zapD 2000684..2001439 (+) 756 WP_160555283.1 cell division protein ZapD -
  GT347_RS09195 (GT347_09195) - 2001468..2001689 (+) 222 WP_160551664.1 DNA gyrase inhibitor YacG -
  GT347_RS09200 (GT347_09200) - 2001791..2002222 (-) 432 WP_160551665.1 NUDIX domain-containing protein -
  GT347_RS09205 (GT347_09205) - 2002215..2003087 (-) 873 WP_160551666.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44299.14 Da        Isoelectric Point: 10.0715

>NTDB_id=415013 GT347_RS09170 WP_160551661.1 1996880..1998097(+) (pilC) [Xylophilus rhododendri strain KACC 21265]
MATAASRGIKDFVFEWEGRDRQGKPVRGELRASGENQVTATLRRQGVVPVKIKKRRMKSGKKIRPKDIAVFTRQLATMMK
AGVPLLQSFDIVGRGNANPSVAKLLNDIRQDVETGTSLSGAFRKHPMYFNSLYCNLVEAGEAAGILESLLDRLASYMEKT
EAIKSKIKSALMYPISVLVVAAVVVSVIMIFVIPAFKQVFSSFGADLPAPTLIVIAMSEFFVSYWWLMLGVLFGIFYFVR
QAWRRSEKFQRNVDRWILKVPVFGPLIDKACVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYLVATEKIQQQVATGT
SLTAAMTNANVFPNMVLQMSAIGEESGALDHMLAKAADVYEAEVDEMVAGLSSLLEPIIIVFLGTLIGGIVVAMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=415013 GT347_RS09170 WP_160551661.1 1996880..1998097(+) (pilC) [Xylophilus rhododendri strain KACC 21265]
ATGGCAACCGCCGCGTCGCGAGGCATCAAGGACTTCGTCTTCGAATGGGAAGGCCGCGACCGCCAGGGCAAGCCGGTGCG
CGGCGAGCTGCGCGCCAGCGGCGAGAACCAGGTCACCGCCACCCTGCGCCGCCAGGGCGTGGTGCCGGTGAAGATCAAAA
AGCGCCGCATGAAGAGCGGCAAGAAGATCCGGCCCAAGGACATCGCCGTCTTCACCCGGCAGCTCGCCACCATGATGAAG
GCCGGCGTGCCGTTGCTGCAGTCCTTCGACATCGTGGGACGCGGCAACGCCAACCCCAGCGTGGCCAAGCTGCTCAACGA
CATCCGCCAGGACGTGGAGACCGGCACCTCGCTGTCGGGCGCCTTCCGCAAGCATCCGATGTACTTCAACAGCCTCTACT
GCAACCTGGTGGAAGCGGGCGAGGCCGCCGGTATCCTGGAATCGCTGCTCGACCGGCTGGCCAGCTACATGGAGAAGACC
GAGGCGATCAAGAGCAAGATCAAGTCGGCGCTGATGTACCCGATCTCGGTGCTGGTGGTGGCGGCCGTGGTGGTGTCGGT
GATCATGATCTTCGTGATCCCGGCCTTCAAGCAGGTCTTCAGCTCCTTCGGAGCCGACCTGCCGGCGCCCACGCTGATCG
TGATCGCCATGAGCGAGTTCTTCGTCTCCTACTGGTGGCTGATGCTGGGCGTGCTGTTCGGCATCTTCTACTTCGTGCGC
CAGGCTTGGCGGCGCAGCGAGAAGTTCCAGCGCAACGTGGACCGCTGGATCCTGAAGGTGCCCGTCTTCGGCCCGCTGAT
CGACAAGGCCTGCGTGGCCCGCTGGACCCGCACCCTCTCCACCATGTTCGCCGCCGGCGTGCCGCTGGTCGAGGCGCTGG
ACTCGGTGGGCGGCGCCTCGGGCAATGCGGTCTACCTGGTGGCCACCGAGAAGATCCAGCAGCAGGTCGCCACCGGCACC
AGCCTGACGGCGGCCATGACCAATGCCAATGTGTTCCCGAACATGGTGCTGCAGATGAGCGCCATCGGCGAGGAATCCGG
CGCGCTCGACCACATGCTGGCCAAGGCCGCCGACGTGTACGAGGCCGAGGTCGACGAGATGGTGGCCGGGCTCTCCAGCC
TGCTGGAGCCGATCATCATCGTGTTCCTGGGCACGCTGATCGGCGGCATCGTGGTGGCCATGTACCTGCCCATCTTCAAG
CTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A857J2J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.703

99.753

0.546
  pilG Neisseria gonorrhoeae MS11

53.266

98.272

0.523
  pilG Neisseria meningitidis 44/76-A

53.015

98.272

0.521
  pilC Legionella pneumophila strain ERS1305867

52.01

98.272

0.511
  pilC Acinetobacter baylyi ADP1

49.497

98.272

0.486
  pilC Acinetobacter baumannii D1279779

49.37

98.025

0.484
  pilC Thermus thermophilus HB27

40.25

98.765

0.398
  pilC Vibrio campbellii strain DS40M4

40.05

98.025

0.393
  pilC Vibrio cholerae strain A1552

39.646

97.778

0.388

Multiple sequence alignment